Publications by authors named "Shubham Tripathi"

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A multilevel formalism to model the hybrid E/M phenotypes in epithelial-mesenchymal plasticity.
Kishore Hari, Shubham Tripathi, Vaibhav Anand, Mohit Kumar Jolly, Herbert Levine

Biophys J· November 2025

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Combined endodontic and periodontal management of trauma-induced tooth resorption: case reports and review of the literature.
Shubham Tripathi, Pallav Patni, Pradeep Jain, Swadhin Raghuwanshi, Sanket Hans Pandey

Gen Dent· October 2025

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PROFET Predicts Continuous Gene Expression Dynamics from scRNA-seq Data to Elucidate Heterogeneity of Cancer Treatment Responses.
Yu-Chen Cheng, Hyemin Gu, Thomas O McDonald, Wenbo Wu, Shubham Tripathi

bioRxiv· July 2025

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Constraints and tunability of antigen-agnostic memory durability.
Shubham Tripathi, Can Liu, William W Lau, Rachel Sparks, John S Tsang

bioRxiv· July 2025

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DNA supercoiling-mediated G4/R-loop formation tunes transcription by controlling the access of RNA polymerase.
Jihee Hwang, Chun-Ying Lee, Sumitabha Brahmachari, Shubham Tripathi, Tapas Paul

Nat Commun· April 2025

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Innovations in denture marking: Forensic applications and clinical implications: A review.
Ajimol Theresa Jose, Tejaspreet Kaur, Sibani Sarangi, Sania Khan, Shubham Tripathi

Bioinformation· November 2024

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Oral health care concerns among autism patients: A review.
Sibani Sarangi, Rajeev Ranjan Raj, Anurag Rawat, Sajjad Salam, Shubham Tripathi

Bioinformation· September 2024

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Reconstruction of single-cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition.
Yu-Chen Cheng, Yun Zhang, Shubham Tripathi, B V Harshavardhan, Mohit Kumar Jolly

Proc Natl Acad Sci U S A· August 2024

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Nonsurgical management of large periapical lesions: case reports and review of the literature.
Shubham Tripathi, Pallav Patni, Pradeep Jain, Swadhin Raghuwanshi, Sanket Hans Pandey

Gen Dent· August 2024

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Nucleosomes play a dual role in regulating transcription dynamics.
Sumitabha Brahmachari, Shubham Tripathi, José N Onuchic, Herbert Levine

Proc Natl Acad Sci U S A· July 2024

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Tailored mesoporous γ-WO nanoplates: unraveling their potential for highly sensitive NH detection and efficient photocatalysis.
Shubham Tripathi, Jyoti Yadav, Atul Kumar, Raj Kamal Yadav, Pratima Chauhan, Satyam Tripathi

Phys Chem Chem Phys· November 2023

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Systems immunology of regulatory T cells: can one circuit explain it all?
Shubham Tripathi, John S Tsang, Kyemyung Park

Trends Immunol· October 2023

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Comparison of Dentinal Tubular Penetration of Intracanal Heated and Preheated Sodium Hypochlorite Through Different Agitation Techniques.
Swati Jain, Pallav Mahesh Patni, Pradeep Jain, Swadhin Raghuwanshi, Sanket Hans Pandey, Shubham Tripathi

J Endod· June 2023

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Fracture resistance of post and core in immediate and delayed post space in trauma simulated teeth.
Shubham Tripathi, Pallav Mahesh Patni, Pradeep Jain, Swadhin Raghuwanshi, Sanket H Pandey

Int J Burns Trauma· June 2023

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Minimal frustration underlies the usefulness of incomplete regulatory network models in biology.
Shubham Tripathi, David A Kessler, Herbert Levine

Proc Natl Acad Sci U S A· January 2023

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Ancient marine sediment DNA reveals diatom transition in Antarctica.
Linda Armbrecht, Michael E Weber, Maureen E Raymo, Victoria L Peck, Trevor Williams, Shubham Tripathi

Nat Commun· October 2022

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Epigenetic factor competition reshapes the EMT landscape.
M Ali Al-Radhawi, Shubham Tripathi, Yun Zhang, Eduardo D Sontag, Herbert Levine

Proc Natl Acad Sci U S A· October 2022

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Episodes of Early Pleistocene West Antarctic Ice Sheet Retreat Recorded by Iceberg Alley Sediments.
Ian Bailey, Sidney Hemming, Brendan T Reilly, Gavyn Rollinson, Trevor Williams, Shubham Tripathi

Paleoceanogr Paleoclimatol· July 2022

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A correlation study of sustainable development goal (SDG) interactions.
Sheeba Pakkan, Christopher Sudhakar, Shubham Tripathi, Mahabaleshwara Rao

Qual Quant· June 2022

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Antiphased dust deposition and productivity in the Antarctic Zone over 1.5 million years.
Michael E Weber, Ian Bailey, Sidney R Hemming, Yasmina M Martos, Brendan T Reilly, Shubham Tripathi

Nat Commun· April 2022

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DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases.
Shubham Tripathi, Sumitabha Brahmachari, José N Onuchic, Herbert Levine

Nucleic Acids Res· February 2022

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A mechanistic modeling framework reveals the key principles underlying tumor metabolism.
Shubham Tripathi, Jun Hyoung Park, Shivanand Pudakalakatti, Pratip K Bhattacharya, Benny Abraham Kaipparettu

PLoS Comput Biol· February 2022

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Plantar Lichen Planus: An Atypical Presentation at a Young Age.
Paras Sisodia, Shubham Tripathi, Parul Verma, Atin Singhai

Cureus· September 2021

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Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer.
Dongya Jia, Jun Hyoung Park, Harsimran Kaur, Kwang Hwa Jung, Sukjin Yang, Shubham Tripathi

Br J Cancer· June 2021

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Identification of EMT signaling cross-talk and gene regulatory networks by single-cell RNA sequencing.
Abhijeet P Deshmukh, Suhas V Vasaikar, Katarzyna Tomczak, Shubham Tripathi, Petra den Hollander

Proc Natl Acad Sci U S A· May 2021

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