Publications by authors named "Eija Trees"

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Genetic Diversity in in Outbreaks of Foodborne and Zoonotic Origin in the USA in 2006-2017.
Eija Trees, Heather A Carleton, Jason P Folster, Laura Gieraltowski, Kelley Hise

Microorganisms· July 2024

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Antimicrobial resistance in multistate outbreaks of nontyphoidal infections linked to animal contact-United States, 2015-2018.
Erin Frey, G Sean Stapleton, Megin C Nichols, Lauren M Gollarza, Meseret Birhane, Eija Trees

J Clin Microbiol· January 2024

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Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection.
Eija Trees, Angela Poates, Ashley Sabol, Patricia LaFon, Jenny Truong

J Microbiol Methods· August 2023

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Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization.
Angela Poates, Jenny Truong, Rebecca Lindsey, Taylor Griswold, Amanda J Williams-Newkirk, Eija Trees

Foodborne Pathog Dis· August 2022

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Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Eric L Stevens, Heather A Carleton, Jennifer Beal, Glenn E Tillman, Rebecca L Lindsey, Eija Trees

J Food Prot· May 2022

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Outbreak of Multidrug-Resistant Heidelberg Infections Linked to Dairy Calf Exposure, United States, 2015-2018.
Megin Nichols, Lauren Gollarza, Donald Sockett, Nicole Aulik, Elisabeth Patton, Eija Trees

Foodborne Pathog Dis· March 2022

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Assessment of Genetic Stability During Serial Passage and Carriage.
Ashley Sabol, Yoo Jin Joung, Christine VanTubbergen, Jerdie Ale, Efrain M Ribot, Eija Trees

Foodborne Pathog Dis· December 2021

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Comparison of four enzymatic library preparation kits for sequencing Shiga toxin-producing Escherichia coli for surveillance and outbreak detection.
Jenny Truong, Angela Poates, Yoo Jin Joung, Ashley Sabol, Taylor Griswold, Eija Trees

J Microbiol Methods· November 2021

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Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks.
Darlene D Wagner, Heather A Carleton, Eija Trees, Lee S Katz

PeerJ· November 2021

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Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Ruth E Timme, Patricia C Lafon, Maria Balkey, Jennifer K Adams, Darlene Wagner, Eija Trees

Sci Data· November 2020

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Outbreak Investigation During a Municipal Water Crisis-Genesee and Saginaw Counties, Michigan, 2016.
R Paul McClung, Mateusz Karwowski, Caroline Castillo, Jevon McFadden, Sarah Collier, Eija Trees

Am J Public Health· June 2020

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PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.
Kristy A Kubota, William J Wolfgang, Deborah J Baker, David Boxrud, Lauren Turner, Eija Trees

Public Health Rep· February 2020

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Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.
Heather A Carleton, John Besser, Amanda J Williams-Newkirk, Andrew Huang, Eija Trees

Foodborne Pathog Dis· July 2019

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Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.
John M Besser, Heather A Carleton, Eija Trees, Steven G Stroika, Kelley Hise

Foodborne Pathog Dis· July 2019

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Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.
Vaishnavi Pattabiraman, Lee S Katz, Jessica C Chen, Andre E McCullough, Eija Trees

PLoS One· May 2019

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Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.
Shaokang Zhang, Shaoting Li, Weidong Gu, Henk den Bakker, Dave Boxrud, Eija Trees

Emerg Infect Dis· January 2019

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Notes from the Field: Investigation of an Outbreak of Salmonella Paratyphi B Variant L(+) tartrate + (Java) Associated with Ball Python Exposure - United States, 2017.
Vikram Krishnasamy, Lauren Stevenson, Lia Koski, Marilee Kellis, Betsy Schroeder, Eija Trees

MMWR Morb Mortal Wkly Rep· May 2018

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Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.
Katherine E Heiman Marshall, Mackenzie Tewell, Selam Tecle, Molly Leeper, Jennifer Sinatra, Eija Trees

MMWR Morb Mortal Wkly Rep· April 2018

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Shiga Toxin-Producing E. coli Infections Associated with Flour.
Samuel J Crowe, Lyndsay Bottichio, Lauren N Shade, Brooke M Whitney, Nereida Corral, Eija Trees

N Engl J Med· November 2017

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Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance.
Ruth E Timme, Hugh Rand, Martin Shumway, Eija K Trees, Mustafa Simmons

PeerJ· October 2017

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High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Strains Generated with PacBio Sequencing and Whole-Genome Maps.
Rebecca L Lindsey, Dhwani Batra, Lori Rowe, Vladimir N Loparev, Phalasy Juieng, Eija Trees

Genome Announc· August 2017

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PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
Celine Nadon, Ivo Van Walle, Peter Gerner-Smidt, Josefina Campos, Isabel Chinen, Eija Trees

Euro Surveill· June 2017

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Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle.
Samuel J Crowe, Alice Green, Kimberly Hernandez, Vi Peralta, Lyndsay Bottichio, Eija Trees

J Food Prot· April 2017

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Multi-laboratory validation study of multilocus variable-number tandem repeat analysis (MLVA) for Salmonella enterica serovar Enteritidis, 2015.
Tansy Peters, Sophie Bertrand, Jonas T Björkman, Lin T Brandal, Derek J Brown, Eija Trees

Euro Surveill· March 2017

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Laboratory Investigation of Salmonella enterica serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.
Varvara K Kozyreva, John Crandall, Ashley Sabol, Alyssa Poe, Peng Zhang, Eija Trees

PLoS Curr· November 2016

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