Publications by authors named "Elena Zotenko"

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DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity.
Qian Du, Grady C Smith, Phuc Loi Luu, James M Ferguson, Nicola J Armstrong, Elena Zotenko

Cell Rep· September 2021

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Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes.
Stephen T Bradford, Shalima S Nair, Aaron L Statham, Susan J van Dijk, Timothy J Peters, Elena Zotenko

Sci Rep· July 2019

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DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.
Ksenia Skvortsova, Etienne Masle-Farquhar, Phuc-Loi Luu, Jenny Z Song, Wenjia Qu, Elena Zotenko

Cancer Cell· February 2019

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Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer.
Qian Du, Saul A Bert, Nicola J Armstrong, C Elizabeth Caldon, Jenny Z Song, Elena Zotenko

Nat Commun· January 2019

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Enduring epigenetic landmarks define the cancer microenvironment.
Ruth Pidsley, Mitchell G Lawrence, Elena Zotenko, Birunthi Niranjan, Aaron Statham

Genome Res· May 2018

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Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA.
Ksenia Skvortsova, Elena Zotenko, Phuc-Loi Luu, Cathryn M Gould, Shalima S Nair

Epigenetics Chromatin· January 2018

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Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas.
Annette M Lim, Nicholas C Wong, Ruth Pidsley, Elena Zotenko, June Corry

Clin Epigenetics· December 2016

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Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling.
Ruth Pidsley, Elena Zotenko, Timothy J Peters, Mitchell G Lawrence, Gail P Risbridger

Genome Biol· October 2016

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Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.
Phillippa C Taberlay, Joanna Achinger-Kawecka, Aaron T L Lun, Fabian A Buske, Kenneth Sabir, Elena Zotenko

Genome Res· June 2016

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Genome-wide DNA methylation profiling in triple-negative breast cancer reveals epigenetic signatures with important clinical value.
Clare Stirzaker, Elena Zotenko, Susan J Clark

Mol Cell Oncol· January 2016

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DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer.
Andrew Stone, Elena Zotenko, Warwick J Locke, Darren Korbie, Ewan K A Millar

Nat Commun· July 2015

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MicroRNA profiling of the pubertal mouse mammary gland identifies miR-184 as a candidate breast tumour suppressor gene.
Yu Wei Phua, Akira Nguyen, Daniel L Roden, Benjamin Elsworth, Niantao Deng, Elena Zotenko

Breast Cancer Res· June 2015

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Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis.
Warwick J Locke, Elena Zotenko, Clare Stirzaker, Mark D Robinson, Rebecca A Hinshelwood

Clin Epigenetics· May 2015

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Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value.
Clare Stirzaker, Elena Zotenko, Jenny Z Song, Wenjia Qu, Shalima S Nair

Nat Commun· February 2015

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A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer.
Ashlee K Clark, Anna V Taubenberger, Renea A Taylor, Birunthi Niranjan, Zhen Y Chea, Elena Zotenko

Biomaterials· July 2013

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Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers.
Jan Hoinka, Elena Zotenko, Adam Friedman, Zuben E Sauna, Teresa M Przytycka

Bioinformatics· June 2012

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On the applicability of elastic network normal modes in small-molecule docking.
Matthias Dietzen, Elena Zotenko, Andreas Hildebrandt, Thomas Lengauer

J Chem Inf Model· March 2012

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Inferring physical protein contacts from large-scale purification data of protein complexes.
Sven-Eric Schelhorn, Julián Mestre, Mario Albrecht, Elena Zotenko

Mol Cell Proteomics· June 2011

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Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality.
Elena Zotenko, Julian Mestre, Dianne P O'Leary, Teresa M Przytycka

PLoS Comput Biol· August 2008

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Structural footprinting in protein structure comparison: the impact of structural fragments.
Elena Zotenko, Rezarta Islamaj Dogan, W John Wilbur, Dianne P O'Leary, Teresa M Przytycka

BMC Struct Biol· August 2007

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Predicting domain-domain interactions using a parsimony approach.
Katia S Guimarães, Raja Jothi, Elena Zotenko, Teresa M Przytycka

Genome Biol· March 2007

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Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification.
Elena Zotenko, Dianne P O'Leary, Teresa M Przytycka

BMC Struct Biol· June 2006

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COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations.
Raja Jothi, Elena Zotenko, Asba Tasneem, Teresa M Przytycka

Bioinformatics· April 2006

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Decomposition of overlapping protein complexes: a graph theoretical method for analyzing static and dynamic protein associations.
Elena Zotenko, Katia S Guimarães, Raja Jothi, Teresa M Przytycka

Algorithms Mol Biol· April 2006

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