Publications by authors named "Elisa Frezza"

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A Multiscale Study to Characterize SHAPE Probe/RNA Molecules Prereactive Complex and Its Role in Initiating the SHAPE Reaction.
Cécilia Hognon, Ameni Ben Abdeljaoued, Pierre Hardouin, Mélanie Etheve-Quelquejeu, Bruno Sargueil, Elisa Frezza

J Chem Inf Model· September 2025

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Investigation of a squaramide motif as a bioisostere of the amino-acid group of S-adenosyl-L-methionine and its functional impact on RNA methylation.
Jianxun Du, Batoul Mahcene, Valerii Martynov, Elisa Frezza, Christelle Vasnier

Commun Chem· August 2025

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Dynamics of Protein-RNA Interfaces Using All-Atom Molecular Dynamics Simulations.
Afra Sabei, Cécilia Hognon, Juliette Martin, Elisa Frezza

J Phys Chem B· May 2024

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Molecular Origin of Distinct Hydration Dynamics in Double Helical DNA and RNA Sequences.
Elisa Frezza, Damien Laage, Elise Duboué-Dijon

J Phys Chem Lett· April 2024

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Internal Normal Mode Analysis Applied to RNA Flexibility and Conformational Changes.
Afra Sabei, Talissa Gabriele Caldas Baia, Raphaël Saffar, Juliette Martin, Elisa Frezza

J Chem Inf Model· April 2023

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A dynamical view of protein-protein complexes: Studies by molecular dynamics simulations.
Juliette Martin, Elisa Frezza

Front Mol Biosci· October 2022

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Progress toward SHAPE Constrained Computational Prediction of Tertiary Interactions in RNA Structure.
Grégoire De Bisschop, Delphine Allouche, Elisa Frezza, Benoît Masquida, Yann Ponty

Noncoding RNA· November 2021

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Biasing RNA Coarse-Grained Folding Simulations with Small-Angle X-ray Scattering Data.
Liuba Mazzanti, Lina Alferkh, Elisa Frezza, Samuela Pasquali

J Chem Theory Comput· October 2021

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Modelling the active SARS-CoV-2 helicase complex as a basis for structure-based inhibitor design.
Dénes Berta, Magd Badaoui, Sam Alexander Martino, Pedro J Buigues, Andrei V Pisliakov, Elisa Frezza

Chem Sci· October 2021

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Induced forms of α-macroglobulin neutralize heparin and direct oral anticoagulant effects.
Georges Jourdi, Johan Abdoul, Virginie Siguret, Xavier Decleves, Elisa Frezza

Int J Biol Macromol· August 2021

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Endoglin Is an Endothelial Housekeeper against Inflammation: Insight in ECFC-Related Permeability through LIMK/Cofilin Pathway.
Elisa Rossi, Alexandre Kauskot, François Saller, Elisa Frezza, Sonia Poirault-Chassac

Int J Mol Sci· August 2021

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Using normal mode analysis on protein structural models. How far can we go on our predictions?
Nuria Cirauqui Diaz, Elisa Frezza, Juliette Martin

Proteins· May 2021

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A Bit Stickier, a Bit Slower, a Lot Stiffer: Specific vs. Nonspecific Binding of Gal4 to DNA.
Thomas Carzaniga, Giuliano Zanchetta, Elisa Frezza, Luca Casiraghi, Luka Vanjur

Int J Mol Sci· April 2021

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Biomimetic Nanoarchitectures for Light Harvesting: Self-Assembly of Pyropheophorbide-Peptide Conjugates.
Elena Meneghin, Francesca Biscaglia, Andrea Volpato, Luca Bolzonello, Danilo Pedron, Elisa Frezza

J Phys Chem Lett· October 2020

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Antibiotic export by MexB multidrug efflux transporter is allosterically controlled by a MexA-OprM chaperone-like complex.
Marie Glavier, Dhenesh Puvanendran, Dimitri Salvador, Marion Decossas, Gilles Phan, Elisa Frezza

Nat Commun· October 2020

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Allosteric Inhibition of Adenylyl Cyclase Type 5 by G-Protein: A Molecular Dynamics Study.
Elisa Frezza, Tina-Méryl Amans, Juliette Martin

Biomolecules· September 2020

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The interplay between molecular flexibility and RNA chemical probing reactivities analyzed at the nucleotide level via an extensive molecular dynamics study.
Elisa Frezza, Antoine Courban, Delphine Allouche, Bruno Sargueil, Samuela Pasquali

Methods· June 2019

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Internal Coordinate Normal Mode Analysis: A Strategy To Predict Protein Conformational Transitions.
Elisa Frezza, Richard Lavery

J Phys Chem B· February 2019

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A molecular dynamics study of adenylyl cyclase: The impact of ATP and G-protein binding.
Elisa Frezza, Juliette Martin, Richard Lavery

PLoS One· July 2018

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Linker dependent chirality of solvent induced self-assembled structures of porphyrin-α-helical peptide conjugates.
Francesca Biscaglia, Elisa Frezza, Enrico Zurlo, Marina Gobbo

Org Biomol Chem· October 2016

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Density functional theory of nematic elasticity: softening from the polar order.
Paolo De Gregorio, Elisa Frezza, Cristina Greco, Alberta Ferrarini

Soft Matter· June 2016

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Hierarchical Propagation of Chirality through Reversible Polymerization: The Cholesteric Phase of DNA Oligomers.
Cristiano De Michele, Giuliano Zanchetta, Tommaso Bellini, Elisa Frezza, Alberta Ferrarini

ACS Macro Lett· February 2016

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Internal Normal Mode Analysis (iNMA) Applied to Protein Conformational Flexibility.
Elisa Frezza, Richard Lavery

J Chem Theory Comput· November 2015

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Self-assembly of hard helices: a rich and unconventional polymorphism.
Hima Bindu Kolli, Elisa Frezza, Giorgio Cinacchi, Alberta Ferrarini, Achille Giacometti

Soft Matter· November 2014

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Left or right cholesterics? A matter of helix handedness and curliness.
Elisa Frezza, Alberta Ferrarini, Hima Bindu Kolli, Achille Giacometti, Giorgio Cinacchi

Phys Chem Chem Phys· August 2014

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