Publications by authors named "Eric D Chow"

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Simultaneous capture of single cell RNA-seq, ATAC-seq, and CRISPR perturbation enables multiomic screens to identify gene regulatory relationships.
Kaivalya Shevade, Yeqing Angela Yang, Kevin Feng, Karl Mader, Volkan Sevim, Eric D Chow

Cell Rep Methods· December 2025

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Myelin injury precedes axonal injury and symptomatic onset in multiple sclerosis.
Ahmed Abdelhak, Gabriel Cerono, Fahime Sheikhzadeh, Adil Harroud, Kiarra Ning, Eric D Chow

Nat Med· October 2025

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Single-cell analysis of human fibrous dysplasia bone reveals a fibrotic transcriptome and GNAS variants in endothelial, perivascular, and stromal cells.
Kelly L Wentworth, Fernando A Fierro, Tania A Moody, Bryan Le, Zachary Michel, Eric D Chow

Am J Hum Genet· September 2025

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Identification and regulation of circulating tumor-TCR-matched cytotoxic CD4+ lymphocytes by KLRG1 in bladder cancer.
Serena S Kwek, Hai Yang, Tony Li, Arielle Ilano, Eric D Chow

JCI Insight· June 2025

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D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response.
Jialong Jiang, Sisi Chen, Tiffany Tsou, Christopher S McGinnis, Tahmineh Khazaei, Eric D Chow

bioRxiv· May 2025

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Reducing batch effects in single cell chromatin accessibility measurements by pooled transposition with MULTI-ATAC.
Daniel N Conrad, Kiet T Phong, Ekaterina Korotkevich, Christopher S McGinnis, Qin Zhu, Eric D Chow

bioRxiv· February 2025

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Immune Modulation with RANKL Blockade through Denosumab Treatment in Patients with Cancer.
Hewitt Chang, Jaqueline Marquez, Brandon K Chen, Daniel M Kim, Michael L Cheng, Eric D Chow

Cancer Immunol Res· April 2024

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Compact CRISPR genetic screens enabled by improved guide RNA library cloning.
Seok-Jin Heo, Lauren D Enriquez, Scot Federman, Amy Y Chang, Rachel Mace, Eric D Chow

Genome Biol· January 2024

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Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution.
Dian Yang, Matthew G Jones, Santiago Naranjo, William M Rideout, Kyung Hoi Joseph Min, Eric D Chow

Cell· May 2022

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Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a Community-Based Testing Site in San Francisco.
James Peng, Jamin Liu, Sabrina A Mann, Anthea M Mitchell, Matthew T Laurie, Eric D Chow

Clin Infect Dis· January 2022

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SCITO-seq: single-cell combinatorial indexed cytometry sequencing.
Byungjin Hwang, David S Lee, Whitney Tamaki, Yang Sun, Anton Ogorodnikov, Eric D Chow

Nat Methods· August 2021

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XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment.
Youjin Lee, Derek Bogdanoff, Yutong Wang, George C Hartoularos, Jonathan M Woo, Eric D Chow

Sci Adv· April 2021

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Estimation of secondary household attack rates for emergent SARS-CoV-2 variants detected by genomic surveillance at a community-based testing site in San Francisco.
James Peng, Sabrina A Mann, Anthea M Mitchell, Jamin Liu, Matthew T Laurie, Eric D Chow

medRxiv· March 2021

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Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids.
Wei Gu, Xianding Deng, Marco Lee, Yasemin D Sucu, Shaun Arevalo, Eric D Chow

Nat Med· January 2021

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Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution.
Thuy Doan, Lee Worden, Armin Hinterwirth, Ahmed M Arzika, Ramatou Maliki, Eric D Chow

N Engl J Med· November 2020

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Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.
Emily D Crawford, Irene Acosta, Vida Ahyong, Erika C Anderson, Shaun Arevalo, Eric D Chow

PLoS Pathog· October 2020

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ZipSeq: barcoding for real-time mapping of single cell transcriptomes.
Kenneth H Hu, John P Eichorst, Chris S McGinnis, David M Patterson, Eric D Chow

Nat Methods· August 2020

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The DNA methylation landscape of advanced prostate cancer.
Shuang G Zhao, William S Chen, Haolong Li, Adam Foye, Meng Zhang, Eric D Chow

Nat Genet· August 2020

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Robust Sequence Determinants of α-Synuclein Toxicity in Yeast Implicate Membrane Binding.
Robert W Newberry, Taylor Arhar, Jean Costello, George C Hartoularos, Alison M Maxwell, Eric D Chow

ACS Chem Biol· August 2020

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Deep mutational scanning reveals the structural basis for α-synuclein activity.
Robert W Newberry, Jaime T Leong, Eric D Chow, Martin Kampmann, William F DeGrado

Nat Chem Biol· June 2020

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Miniaturization and optimization of 384-well compatible RNA sequencing library preparation.
Madeline Y Mayday, Lillian M Khan, Eric D Chow, Matt S Zinter, Joseph L DeRisi

PLoS One· September 2019

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FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences.
Jenai Quan, Charles Langelier, Alison Kuchta, Joshua Batson, Noam Teyssier, Eric D Chow

Nucleic Acids Res· August 2019

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MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices.
Christopher S McGinnis, David M Patterson, Juliane Winkler, Daniel N Conrad, Marco Y Hein, Eric D Chow

Nat Methods· July 2019

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Predicting Splicing from Primary Sequence with Deep Learning.
Kishore Jaganathan, Sofia Kyriazopoulou Panagiotopoulou, Jeremy F McRae, Siavash Fazel Darbandi, David Knowles, Eric D Chow

Cell· January 2019

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Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults.
Charles Langelier, Katrina L Kalantar, Farzad Moazed, Michael R Wilson, Emily D Crawford, Eric D Chow

Proc Natl Acad Sci U S A· December 2018

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