Publications by authors named "Xianding Deng"

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CRISPR-Cas12-based detection of SARS-CoV-2.
James P Broughton, Xianding Deng, Guixia Yu, Clare L Fasching, Venice Servellita, Jasmeet Singh, Xin Miao, Jessica A Streithorst, Andrea Granados, Alicia Sotomayor-Gonzalez

Nat Biotechnol· July 2020

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Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections.
Paula Hayakawa Serpa, Xianding Deng, Mazin Abdelghany, Emily Crawford, Katherine Malcolm

Genome Med· July 2022

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Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California.
Venice Servellita, Mary Kate Morris, Alicia Sotomayor-Gonzalez, Amelia S Gliwa, Erika Torres, Xianding Deng

Nat Microbiol· February 2022

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Timely intervention and control of a novel coronavirus (COVID-19) outbreak at a large skilled nursing facility-San Francisco, California, 2020.
Ellora N Karmarkar, Irin Blanco, Pauli N Amornkul, Amie DuBois, Xianding Deng

Infect Control Hosp Epidemiol· October 2021

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Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California.
Elsa Villarino, Xianding Deng, Carol A Kemper, Michelle A Jorden, Brandon Bonin

J Infect Dis· July 2021

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Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant.
Xianding Deng, Miguel A Garcia-Knight, Mir M Khalid, Venice Servellita, Candace Wang

Cell· June 2021

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Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.
Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Xianding Deng

Cell· May 2021

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Transmission, infectivity, and antibody neutralization of an emerging SARS-CoV-2 variant in California carrying a L452R spike protein mutation.
Xianding Deng, Miguel A Garcia-Knight, Mir M Khalid, Venice Servellita, Candace Wang

medRxiv· March 2021

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Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.
Nicole L Washington, Karthik Gangavarapu, Mark Zeller, Alexandre Bolze, Elizabeth T Cirulli, Xianding Deng

medRxiv· February 2021

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Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids.
Wei Gu, Xianding Deng, Marco Lee, Yasemin D Sucu, Shaun Arevalo

Nat Med· January 2021

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Associations of Early COVID-19 Cases in San Francisco With Domestic and International Travel.
Wei Gu, Xianding Deng, Kevin Reyes, Elaine Hsu, Candace Wang

Clin Infect Dis· December 2020

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Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19.
Sachin J Shah, Peter N Barish, Priya A Prasad, Amy Kistler, Norma Neff, Xianding Deng

EClinicalMedicine· October 2020

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Cryptic transmission of SARS-CoV-2 in Washington state.
Trevor Bedford, Alexander L Greninger, Pavitra Roychoudhury, Lea M Starita, Michael Famulare, Xianding Deng

Science· October 2020

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New Genomes from the Congo Basin Expand History of CRF01_AE Origin and Dissemination.
Dennis Maletich Junqueira, Eduan Wilkinson, Ana Vallari, Xianding Deng, Asmeeta Achari

AIDS Res Hum Retroviruses· July 2020

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Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.
Xianding Deng, Wei Gu, Scot Federman, Louis du Plessis, Oliver G Pybus

Science· July 2020

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Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19.
Sachin J Shah, Peter N Barish, Priya A Prasad, Amy L Kistler, Norma Neff, Xianding Deng

medRxiv· May 2020

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Cryptic transmission of SARS-CoV-2 in Washington State.
Trevor Bedford, Alexander L Greninger, Pavitra Roychoudhury, Lea M Starita, Michael Famulare, Xianding Deng

medRxiv· April 2020

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Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.
Xianding Deng, Asmeeta Achari, Scot Federman, Guixia Yu, Sneha Somasekar

Nat Microbiol· March 2020

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Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.
Xianding Deng, Asmeeta Achari, Scot Federman, Guixia Yu, Sneha Somasekar

Nat Microbiol· March 2020

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Rapid Detection of 2019 Novel Coronavirus SARS-CoV-2 Using a CRISPR-based DETECTR Lateral Flow Assay.
James P Broughton, Xianding Deng, Guixia Yu, Clare L Fasching, Jasmeet Singh

medRxiv· March 2020

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A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage.
Xianding Deng, Wei Gu, Scot Federman, Louis du Plessis, Oliver G Pybus

medRxiv· March 2020

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Whole-genome Sequencing for Surveillance of Invasive Pneumococcal Diseases in Ontario, Canada: Rapid Prediction of Genotype, Antibiotic Resistance and Characterization of Emerging Serotype 22F.
Xianding Deng, Nader Memari, Sarah Teatero, Taryn Athey, Marc Isabel

Front Microbiol· December 2016

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Population structure and drug resistance patterns of emerging non-PCV-13 Streptococcus pneumoniae serotypes 22F, 15A, and 8 isolated from adults in Ontario, Canada.
Venkata R Duvvuri, Xianding Deng, Sarah Teatero, Nader Memari, Taryn Athey

Infect Genet Evol· August 2016

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Whole-Genome Sequencing Reveals the Origin and Rapid Evolution of an Emerging Outbreak Strain of Streptococcus pneumoniae 12F.
Xianding Deng, Gisele Peirano, Erin Schillberg, Tony Mazzulli, Scott D Gray-Owen

Clin Infect Dis· May 2016

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Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar.
Michael Desilets, Xianding Deng, Chitong Rao, Alexander W Ensminger, Denis O Krause

Inflamm Bowel Dis· January 2016

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