Publications by authors named "Eric Deeds"

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Life in the fast lane: Functional consequences of male-female dynamic differences in the renal auto-regulation of flow.
Lingyun Ivy Xiong, Alan Garfinkel, Kevin M Bennett, Edwin J Baldelomar, Lauryn Brown, Eric J Deeds

bioRxiv· October 2025

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Sarcospan protects against LGMD R5 via remodeling of the sarcoglycan complex composition in dystrophic mice.
Ekaterina I Mokhonova, Daniel Helzer, Ravinder Malik, Hafsa Mamsa, Jackson Walker, Eric J Deeds

J Clin Invest· September 2025

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DeepAtlas: a tool for effective manifold learning.
Serena Hughes, Timothy Hamilton, Tom Kolokotrones, Eric J Deeds

ArXiv· August 2025

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DeepAtlas: a tool for effective manifold learning.
Serena Hughes, Timothy Hamilton, Tom Kolokotrones, Eric J Deeds

bioRxiv· August 2025

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Binomial models uncover biological variation during feature selection of droplet-based single-cell RNA sequencing.
Breanne Sparta, Timothy Hamilton, Gunalan Natesan, Samuel D Aragones, Eric J Deeds

PLoS Comput Biol· September 2024

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Modeling reveals the strength of weak interactions in stacked-ring assembly.
Leonila Lagunes, Koan Briggs, Paige Martin-Holder, Zaikun Xu, Dustin Maurer, Eric J Deeds

Biophys J· July 2024

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Novel metrics reveal new structure and unappreciated heterogeneity in Caenorhabditis elegans development.
Gunalan Natesan, Timothy Hamilton, Eric J Deeds, Pavak K Shah

PLoS Comput Biol· December 2023

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Novel metrics reveal new structure and unappreciated heterogeneity in C. elegans development.
Gunalan Natesan, Timothy Hamilton, Eric J Deeds, Pavak K Shah

bioRxiv· May 2023

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Altered physical phenotypes of leukemia cells that survive chemotherapy treatment.
Chau Ly, Heather Ogana, Hye Na Kim, Samantha Hurwitz, Eric J Deeds

Integr Biol (Camb)· April 2023

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Understanding the separation of timescales in bacterial proteasome core particle assembly.
Pushpa Itagi, Anupama Kante, Leonila Lagunes, Eric J Deeds

Biophys J· October 2022

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Docking-based long timescale simulation of cell-size protein systems at atomic resolution.
Ilya A Vakser, Sergei Grudinin, Nathan W Jenkins, Petras J Kundrotas, Eric J Deeds

Proc Natl Acad Sci U S A· October 2022

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Teaching Dynamics to Biology Undergraduates: the UCLA Experience.
Alan Garfinkel, Steve Bennoun, Eric Deeds, Blaire Van Valkenburgh

Bull Math Biol· February 2022

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Robustness and the evolution of length control strategies in the T3SS and flagellar hook.
Maulik K Nariya, Abhishek Mallela, Jack J Shi, Eric J Deeds

Biophys J· September 2021

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Quantifying information accumulation encoded in the dynamics of biochemical signaling.
Ying Tang, Adewunmi Adelaja, Felix X-F Ye, Eric Deeds, Roy Wollman

Nat Commun· February 2021

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Crosstalk and ultrasensitivity in protein degradation pathways.
Abhishek Mallela, Maulik K Nariya, Eric J Deeds

PLoS Comput Biol· December 2020

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Machine learning classification can reduce false positives in structure-based virtual screening.
Yusuf O Adeshina, Eric J Deeds, John Karanicolas

Proc Natl Acad Sci U S A· August 2020

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Cooperativity in Proteasome Core Particle Maturation.
Anjana Suppahia, Pushpa Itagi, Alicia Burris, Faith Mi Ge Kim, Alexander Vontz, Eric J Deeds

iScience· May 2020

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Signal integration and information transfer in an allosterically regulated network.
Erin M Shockley, Carol A Rouzer, Lawrence J Marnett, Eric J Deeds, Carlos F Lopez

NPJ Syst Biol Appl· April 2020

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Differential Contributions of Actin and Myosin to the Physical Phenotypes and Invasion of Pancreatic Cancer Cells.
Angelyn V Nguyen, Brittany Trompetto, Xing Haw Marvin Tan, Michael B Scott, Kenneth Hsueh-Heng Hu, Eric Deeds

Cell Mol Bioeng· February 2020

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Computational approaches to macromolecular interactions in the cell.
Ilya A Vakser, Eric J Deeds

Curr Opin Struct Biol· April 2019

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Intrinsic limits of information transmission in biochemical signalling motifs.
Ryan Suderman, Eric J Deeds

Interface Focus· December 2018

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Chemical Stability of the Botanical Drug Substance Crofelemer: A Model System for Comparative Characterization of Complex Mixture Drugs.
Asha Hewarathna, Olivier Mozziconacci, Maulik K Nariya, Peter A Kleindl, Jian Xiong, Eric J Deeds

J Pharm Sci· November 2017

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The Botanical Drug Substance Crofelemer as a Model System for Comparative Characterization of Complex Mixture Drugs.
Peter A Kleindl, Jian Xiong, Asha Hewarathna, Olivier Mozziconacci, Maulik K Nariya, Eric J Deeds

J Pharm Sci· November 2017

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Comparative Characterization of Crofelemer Samples Using Data Mining and Machine Learning Approaches With Analytical Stability Data Sets.
Maulik K Nariya, Jae Hyun Kim, Jian Xiong, Peter A Kleindl, Asha Hewarathna, Eric J Deeds

J Pharm Sci· November 2017

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Crosstalk and the evolvability of intracellular communication.
Michael A Rowland, Joseph M Greenbaum, Eric J Deeds

Nat Commun· July 2017

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