Publications by authors named "Erika Lindquist"

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Fungi Modulate the Switchgrass Root Transcriptome to Circumvent Host Defenses and Establish a Symbiotic Relationship.
Prasun Ray, Yingqing Guo, Myoung-Hwan Chi, Nick Krom, Clarissa Boschiero, Erika A Lindquist

Mol Plant Microbe Interact· October 2021

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The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.
Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A Boulton, Kerrie Barry, Erika Lindquist

Nat Commun· September 2021

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Succession of physiological stages hallmarks the transcriptomic response of the fungus to lignocellulose.
Jolanda M van Munster, Paul Daly, Martin J Blythe, Roger Ibbett, Matt Kokolski, Erika Lindquist

Biotechnol Biofuels· April 2020

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Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus.
Jin Zhang, Meng Xie, Mi Li, Jinhua Ding, Yunqiao Pu, Erika A Lindquist

Plant Biotechnol J· March 2020

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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal .
Salvatore Casarrubia, Elena Martino, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Erika A Lindquist

Front Microbiol· March 2020

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Identification of functional single nucleotide polymorphism of and determination of its transcriptional effect.
Meng Xie, Jin Zhang, Vasanth R Singan, Melissa J McGranahan, Peter R LaFayette, Erika Lindquist

Plant Direct· January 2020

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Metatranscriptomic Analyses of Diel Metabolic Functions During a Bloom in Western Lake Erie (United States).
Emily J Davenport, Michelle J Neudeck, Paul G Matson, George S Bullerjahn, Timothy W Davis, Erika Lindquist

Front Microbiol· September 2019

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Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase.
Jessy Labbé, Wellington Muchero, Olaf Czarnecki, Juan Wang, Xiaoping Wang, Erika Lindquist

Nat Plants· July 2019

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Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Claude Murat, Thibaut Payen, Benjamin Noel, Alan Kuo, Emmanuelle Morin, Erika A Lindquist

Nat Ecol Evol· December 2018

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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.
Wellington Muchero, Kelsey L Sondreli, Jin-Gui Chen, Breeanna R Urbanowicz, Jin Zhang, Erika Lindquist

Proc Natl Acad Sci U S A· November 2018

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Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus.
Jin Zhang, Yongil Yang, Kaijie Zheng, Meng Xie, Kai Feng, Erika Lindquist

New Phytol· October 2018

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A 5-Enolpyruvylshikimate 3-Phosphate Synthase Functions as a Transcriptional Repressor in .
Meng Xie, Wellington Muchero, Anthony C Bryan, Kelsey Yee, Hao-Bo Guo, Erika Lindquist

Plant Cell· July 2018

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Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle.
Claude Murat, Alan Kuo, Kerrie W Barry, Alicia Clum, Rhyan B Dockter, Erika A Lindquist

Genome Announc· June 2018

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Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.
Elena Martino, Emmanuelle Morin, Gwen-Aëlle Grelet, Alan Kuo, Annegret Kohler, Erika A Lindquist

New Phytol· February 2018

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Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant-cyanobacteria symbiosis.
Denis Warshan, Josh L Espinoza, Rhona K Stuart, R Alexander Richter, Sea-Yong Kim, Erika Lindquist

ISME J· December 2017

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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
John L Bowman, Takayuki Kohchi, Katsuyuki T Yamato, Jerry Jenkins, Shengqiang Shu, Erika Lindquist

Cell· October 2017

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Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Strain CCAP19/18.
Juergen E W Polle, Kerrie Barry, John Cushman, Jeremy Schmutz, Duc Tran, Erika Lindquist

Genome Announc· October 2017

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Insights into the red algae and eukaryotic evolution from the genome of (Bangiophyceae, Rhodophyta).
Susan H Brawley, Nicolas A Blouin, Elizabeth Ficko-Blean, Glen L Wheeler, Martin Lohr, Erika A Lindquist

Proc Natl Acad Sci U S A· August 2017

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Widespread adenine N6-methylation of active genes in fungi.
Stephen J Mondo, Richard O Dannebaum, Rita C Kuo, Katherine B Louie, Adam J Bewick, Erika Lindquist

Nat Genet· June 2017

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Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.
Weihua Wu, Ryan W Davis, Mary Bao Tran-Gyamfi, Alan Kuo, Kurt LaButti, Erika Lindquist

Appl Microbiol Biotechnol· March 2017

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Expression of CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.
Paul Daly, Jolanda M van Munster, Martin J Blythe, Roger Ibbett, Matt Kokolski, Erika Lindquist

Biotechnol Biofuels· February 2017

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Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Ronald P de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Erika Lindquist

Genome Biol· February 2017

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Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas.
Valeria Fochi, Walter Chitarra, Annegret Kohler, Samuele Voyron, Vasanth R Singan, Erika A Lindquist

New Phytol· January 2017

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Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Thomas Mock, Robert P Otillar, Jan Strauss, Mark McMullan, Pirita Paajanen, Erika A Lindquist

Nature· January 2017

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Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.
Martina Peter, Annegret Kohler, Robin A Ohm, Alan Kuo, Jennifer Krützmann, Erika Lindquist

Nat Commun· September 2016

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