Publications by authors named "Evan Paull"

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Predicting Resistance to Small Molecule Kinase Inhibitors.
Anu Nagarajan, Katherine Amberg-Johnson, Evan Paull, Kunling Huang, Phani Ghanakota

J Chem Inf Model· March 2025

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Identification and Pharmacological Targeting of Treatment-Resistant, Stem-like Breast Cancer Cells for Combination Therapy.
Jeremy Worley, Heeju Noh, Daoqi You, Mikko M Turunen, Hongxu Ding, Evan Paull

bioRxiv· February 2025

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Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.
Joshua Broyde, David R Simpson, Diana Murray, Evan O Paull, Brennan W Chu

Nat Biotechnol· February 2021

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A modular master regulator landscape controls cancer transcriptional identity.
Evan O Paull, Alvaro Aytes, Sunny J Jones, Prem S Subramaniam, Federico M Giorgi

Cell· January 2021

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The Master Regulator Protein BAZ2B Can Reprogram Human Hematopoietic Lineage-Committed Progenitors into a Multipotent State.
Karthik Arumugam, William Shin, Valentina Schiavone, Lukas Vlahos, Xiaochuan Tu, Evan O Paull

Cell Rep· December 2020

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The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Evan O Paull

Immunity· August 2019

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SJARACNe: a scalable software tool for gene network reverse engineering from big data.
Alireza Khatamian, Evan O Paull, Andrea Califano, Jiyang Yu

Bioinformatics· June 2019

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The number of titrated microRNA species dictates ceRNA regulation.
Hua-Sheng Chiu, María Rodríguez Martínez, Elena V Komissarova, David Llobet-Navas, Mukesh Bansal, Evan O Paull

Nucleic Acids Res· May 2018

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The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Evan O Paull

Immunity· April 2018

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Prophetic Granger Causality to infer gene regulatory networks.
Daniel E Carlin, Evan O Paull, Kiley Graim, Christopher K Wong, Adrian Bivol

PLoS One· January 2018

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A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.
Mehmet Gönen, Barbara A Weir, Glenn S Cowley, Francisca Vazquez, Yuanfang Guan, Evan Paull

Cell Syst· November 2017

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Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling.
Mario Niepel, Marc Hafner, Qiaonan Duan, Zichen Wang, Evan O Paull

Nat Commun· October 2017

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Revealing cancer subtypes with higher-order correlations applied to imaging and omics data.
Kiley Graim, Tiffany Ting Liu, Achal S Achrol, Evan O Paull, Yulia Newton

BMC Med Genomics· March 2017

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ONE-CLASS DETECTION OF CELL STATES IN TUMOR SUBTYPES.
Artem Sokolov, Evan O Paull, Joshua M Stuart

Pac Symp Biocomput· October 2016

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Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer.
Justin M Drake, Evan O Paull, Nicholas A Graham, John K Lee, Bryan A Smith

Cell· August 2016

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Inferring causal molecular networks: empirical assessment through a community-based effort.
Steven M Hill, Laura M Heiser, Thomas Cokelaer, Michael Unger, Nicole K Nesser, Evan O Paull

Nat Methods· April 2016

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Pathway-Based Genomics Prediction using Generalized Elastic Net.
Artem Sokolov, Daniel E Carlin, Evan O Paull, Robert Baertsch, Joshua M Stuart

PLoS Comput Biol· March 2016

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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

N Engl J Med· June 2015

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Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).
Evan O Paull, Daniel E Carlin, Mario Niepel, Peter K Sorger, David Haussler

Bioinformatics· November 2013

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Molecular pathways: extracting medical knowledge from high-throughput genomic data.
Theodore C Goldstein, Evan O Paull, Matthew J Ellis, Joshua M Stuart

Clin Cancer Res· June 2013

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