Publications by authors named "Fernando Mazza"

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On the structural affinity of macromolecules with different biological properties: molecular dynamics simulations of a series of TEM-1 mutants.
Alessia Di Giampaolo, Fernando Mazza, Isabella Daidone, Gianfranco Amicosante, Mariagrazia Perilli

Biochem Biophys Res Commun· July 2013

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Conformational study of bovine lactoferricin in membrane-micking conditions by molecular dynamics simulation and circular dichroism.
Isabella Daidone, Alessandro Magliano, Alfredo Di Nola, Giuseppina Mignogna, Matilda Manuela Clarkson, Fernando Mazza

Biometals· April 2011

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Structural insight into peroxisome proliferator-activated receptor gamma binding of two ureidofibrate-like enantiomers by molecular dynamics, cofactor interaction analysis, and site-directed mutagenesis.
Giorgio Pochetti, Nico Mitro, Antonio Lavecchia, Federica Gilardi, Neva Besker, Fernando Mazza

J Med Chem· June 2010

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New 2-aryloxy-3-phenyl-propanoic acids as peroxisome proliferator-activated receptors alpha/gamma dual agonists with improved potency and reduced adverse effects on skeletal muscle function.
Giuseppe Fracchiolla, Antonio Laghezza, Luca Piemontese, Paolo Tortorella, Fernando Mazza

J Med Chem· October 2009

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Extra binding region induced by non-zinc chelating inhibitors into the S1' subsite of matrix metalloproteinase 8 (MMP-8).
Giorgio Pochetti, Roberta Montanari, Christian Gege, Carine Chevrier, Arthur G Taveras, Fernando Mazza

J Med Chem· February 2009

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Crystal structure of the peroxisome proliferator-activated receptor gamma (PPARgamma) ligand binding domain complexed with a novel partial agonist: a new region of the hydrophobic pocket could be exploited for drug design.
Roberta Montanari, Fulvio Saccoccia, Elena Scotti, Maurizio Crestani, Cristina Godio, Fernando Mazza

J Med Chem· December 2008

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1,3-Dialkyl-8-(hetero)aryl-9-OH-9-deazaxanthines as potent A2B adenosine receptor antagonists: design, synthesis, structure-affinity and structure-selectivity relationships.
Angela Stefanachi, Orazio Nicolotti, Francesco Leonetti, Saverio Cellamare, Francesco Campagna, Fernando Mazza

Bioorg Med Chem· November 2008

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Insights into the mechanism of partial agonism: crystal structures of the peroxisome proliferator-activated receptor gamma ligand-binding domain in the complex with two enantiomeric ligands.
Giorgio Pochetti, Cristina Godio, Nico Mitro, Donatella Caruso, Andrea Galmozzi, Fernando Mazza

J Biol Chem· June 2007

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alpha-Biphenylsulfonylamino 2-methylpropyl phosphonates: enantioselective synthesis and selective inhibition of MMPs.
Alessandro Biasone, Paolo Tortorella, Cristina Campestre, Mariangela Agamennone, Serena Preziuso, Fernando Mazza

Bioorg Med Chem· January 2007

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Stereoselectivity by enantiomeric inhibitors of matrix metalloproteinase-8: new insights from molecular dynamics simulations.
Massimiliano Aschi, Neva Besker, Nazzareno Re, Giorgio Pochetti, Cecilia Coletti, Fernando Mazza

J Med Chem· January 2007

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Molecular dynamics simulation of Leishmania major surface metalloprotease GP63 (leishmanolysin).
Gianluca Bianchini, Alessio Bocedi, Paolo Ascenzi, Enrico Gavuzzo, Fernando Mazza

Proteins· August 2006

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Structural insight into the stereoselective inhibition of MMP-8 by enantiomeric sulfonamide phosphonates.
Giorgio Pochetti, Enrico Gavuzzo, Cristina Campestre, Mariangela Agamennone, Paolo Tortorella, Fernando Mazza

J Med Chem· February 2006

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N-Hydroxyurea as zinc binding group in matrix metalloproteinase inhibition: mode of binding in a complex with MMP-8.
Cristina Campestre, Mariangela Agamennone, Paolo Tortorella, Serena Preziuso, Alessandro Biasone, Fernando Mazza

Bioorg Med Chem Lett· January 2006

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Design, modelling, synthesis and biological evaluation of peptidomimetic phosphinates as inhibitors of matrix metalloproteinases MMP-2 and MMP-8.
Gianluca Bianchini, Massimiliano Aschi, Giancarlo Cavicchio, Marcello Crucianelli, Serena Preziuso, Fernando Mazza

Bioorg Med Chem· August 2005

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Dynamical aspects of TEM-1 beta-lactamase probed by molecular dynamics.
Danilo Roccatano, Gianluca Sbardella, Massimiliano Aschi, Gianfranco Amicosante, Cecilia Bossa, Fernando Mazza

J Comput Aided Mol Des· May 2005

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Synthesis and evaluation of new tripeptide phosphonate inhibitors of MMP-8 and MMP-2.
Mariangela Agamennone, Cristina Campestre, Serena Preziuso, Valerio Consalvi, Marcello Crucianelli, Fernando Mazza

Eur J Med Chem· March 2005

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Peptides containing 4-amino-1,2-dithiolane-4-carboxylic acid (Adt): conformation of Boc-Adt-Adt-NHMe and NH...S interactions.
Enrico Morera, Marianna Nalli, Adriano Mollica, Mario Paglialunga Paradisi, Massimiliano Aschi, Fernando Mazza

J Pept Sci· February 2005

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Overexpression system and biochemical profile of CTX-M-3 extended-spectrum beta-lactamase expressed in Escherichia coli.
Mariagrazia Perilli, Daniela Ettorre, Bernardetta Segatore, Bibiana Caporale, Francesca De Santis, Fernando Mazza

FEMS Microbiol Lett· December 2004

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Hybrid alpha/beta3-peptides with proteinogenic side chains. Monosubstituted analogues of the chemotactic tripeptide For-Met-Leu-Phe-OMe.
Cesare Giordano, Gino Lucente, Adriano Mollica, Marianna Nalli, Giampiero Pagani Zecchini, Fernando Mazza

J Pept Sci· August 2004

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Peptide backbone folding induced by the C(alpha)-tetrasubstituted cyclic alpha-amino acids 4-amino-1,2-dithiolane-4-carboxylic acid (Adt) and 1-aminocyclopentane-1-carboxylic acid (Ac5c). A joint computational and experimental study.
Massimiliano Aschi, Gino Lucente, Fernando Mazza, Adriano Mollica, Enrico Morera

Org Biomol Chem· June 2003

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Computational study of the catalytic domain of human neutrophil collagenase. specific role of the S3 and S'3 subsites in the interaction with a phosphonate inhibitor.
Massimiliano Aschi, Danilo Roccatano, Alfredo Di Nola, Carlo Gallina, Enrico Gavuzzo, Fernando Mazza

J Comput Aided Mol Des· March 2002

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Exploring the interest of 1,2-dithiolane ring system in peptide chemistry. Synthesis of a chemotactic tripeptide and x-ray crystal structure of a 4-amino-1,2-dithiolane-4-carboxylic acid derivative.
Enrico Morera, Gino Lucente, Giorgio Ortar, Marianna Nalli, Fernando Mazza

Bioorg Med Chem· January 2002

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