Publications by authors named "Fons Verbeek"

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Advancing leprosy risk prediction through identification of a whole blood host transcriptomic biomarker signature including non-coding genes.
Matheus Rogerio Almeida, Elisa Gherardi, Suzanne van Veen, Luca Maharavo, Aart Rosmolen, Fons J Verbeek

Sci Rep· December 2025

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Transformer-based multiclass segmentation pipeline for basic kidney histology.
Junling He, Pieter A Valkema, Jingmin Long, Jia Li, Sandrine Florquin, Fons J Verbeek

Sci Rep· November 2025

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Advances in kidney biopsy lesion assessment through dense instance segmentation.
Zhan Xiong, Junling He, Pieter Valkema, Tri Q Nguyen, Maarten Naesens, Fons J Verbeek

Artif Intell Med· June 2025

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Deep Learning-Based Classification of Early-Stage Mycosis Fungoides and Benign Inflammatory Dermatoses on H&E-Stained Whole-Slide Images: A Retrospective, Proof-of-Concept Study.
Thom Doeleman, Siemen Brussee, Liesbeth M Hondelink, Daniëlle W F Westerbeek, Ana M Sequeira, Fons J Verbeek

J Invest Dermatol· May 2025

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Embryonic and larval zebrafish models for the discovery of new bioactive compounds against tuberculosis.
Stella S Antunes, Gabriel Forn-Cuní, Nelilma C Romeiro, Herman P Spaink, Fons J Verbeek

Drug Discov Today· November 2024

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Exploring the Antimycobacterial Potential of Podocarpusflavone A from : In Vitro and In Vivo Insights.
Marlon Heggdorne de Araujo, Salomé Muñoz Sánchez, Thatiana Lopes Biá Ventura Simão, Natalia Nowik, Stella Schuenck Antunes, Fons J Verbeek

Pharmaceuticals (Basel)· November 2024

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Multiple graphical views for automatically generating SQL for the MycoDiversity DB; making fungal biodiversity studies accessible.
Irene Martorelli, Aram Pooryousefi, Haike van Thiel, Floris J Sicking, Guus J Ramackers, Fons J Verbeek

Biodivers Data J· June 2024

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Image Synthesis and Modified BlendMask Instance Segmentation for Automated Nanoparticle Phenotyping.
Xiaoqin Tang, Lingpeng Lv, Shima Javanmardi, Yunfeng Wang, Jingchuan Fan, Fons J Verbeek

IEEE Trans Med Imaging· December 2023

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Outlier detection using iterative adaptive mini-minimum spanning tree generation with applications on medical data.
Jia Li, Jiangwei Li, Chenxu Wang, Fons J Verbeek, Tanja Schultz

Front Physiol· October 2023

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Caps Captioning: A Modern Image Captioning Approach Based on Improved Capsule Network.
Shima Javanmardi, Ali Mohammad Latif, Mohammad Taghi Sadeghi, Mehrdad Jahanbanifard, Marcello Bonsangue, Fons J Verbeek

Sensors (Basel)· November 2022

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A database of flavivirus RNA structures with a search algorithm for pseudoknots and triple base interactions.
Alan Zammit, Leon Helwerda, René C L Olsthoorn, Fons J Verbeek, Alexander P Gultyaev

Bioinformatics· May 2021

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Neural networks for increased accuracy of allergenic pollen monitoring.
Marcel Polling, Chen Li, Lu Cao, Fons Verbeek, Letty A de Weger

Sci Rep· May 2021

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Establishing a consensus for the hallmarks of cancer based on gene ontology and pathway annotations.
Yi Chen, Fons J Verbeek, Katherine Wolstencroft

BMC Bioinformatics· April 2021

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A Novel Function of TLR2 and MyD88 in the Regulation of Leukocyte Cell Migration Behavior During Wounding in Zebrafish Larvae.
Wanbin Hu, Leonie van Steijn, Chen Li, Fons J Verbeek, Lu Cao

Front Cell Dev Biol· February 2021

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Anti-tuberculosis effect of isoniazid scales accurately from zebrafish to humans.
Rob C van Wijk, Wanbin Hu, Sharka M Dijkema, Dirk-Jan van den Berg, Jeremy Liu, Fons J Verbeek

Br J Pharmacol· December 2020

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Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes.
Lu Cao, Andries D van der Meer, Fons J Verbeek, Robert Passier

BMC Bioinformatics· May 2020

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Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB).
Irene Martorelli, Leon S Helwerda, Jesse Kerkvliet, Sofia I F Gomes, Jorinde Nuytinck, Fons J Verbeek

J Integr Bioinform· May 2020

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Predicting Metabolism from Gene Expression in an Improved Whole-Genome Metabolic Network Model of .
Leonie van Steijn, Fons J Verbeek, Herman P Spaink, Roeland M H Merks

Zebrafish· August 2019

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An efficient and robust hybrid method for segmentation of zebrafish objects from bright-field microscope images.
Yuanhao Guo, Zhan Xiong, Fons J Verbeek

Mach Vis Appl· May 2018

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Towards Controlled Single-Molecule Manipulation Using "Real-Time" Molecular Dynamics Simulation: A GPU Implementation.
Dyon van Vreumingen, Sumit Tewari, Fons Verbeek, Jan M van Ruitenbeek

Micromachines (Basel)· May 2018

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Fast Post-Processing Pipeline for Optical Projection Tomography.
Xiaoqin Tang, Dennis M van der Zwaan, Alan Zammit, Kristian F D Rietveld, Fons J Verbeek

IEEE Trans Nanobioscience· July 2017

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Three-dimensional reconstruction and measurements of zebrafish larvae from high-throughput axial-view imaging.
Yuanhao Guo, Wouter J Veneman, Herman P Spaink, Fons J Verbeek

Biomed Opt Express· May 2017

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Cellular adhesome screen identifies critical modulators of focal adhesion dynamics, cellular traction forces and cell migration behaviour.
Michiel Fokkelman, Hayri E Balcıoğlu, Janna E Klip, Kuan Yan, Fons J Verbeek

Sci Rep· August 2016

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Hierarchical classification strategy for Phenotype extraction from epidermal growth factor receptor endocytosis screening.
Lu Cao, Marjo de Graauw, Kuan Yan, Leah Winkel, Fons J Verbeek

BMC Bioinformatics· May 2016

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Modeling biological gradient formation: combining partial differential equations and Petri nets.
Laura M F Bertens, Jetty Kleijn, Sander C Hille, Monika Heiner, Maciej Koutny, Fons J Verbeek

Nat Comput· October 2015

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