Publications by authors named "Francesco Andreace"

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Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe.
Xian Chang, Adam M Novak, Jordan M Eizenga, Jouni Sirén, Jean Monlong, Francesco Andreace

bioRxiv· October 2025

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Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe.
Xian Chang, Adam M Novak, Jordan M Eizenga, Jouni Sirén, Jean Monlong, Francesco Andreace

Res Sq· October 2025

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MUSET: set of utilities for constructing abundance unitig matrices from sequencing data.
Riccardo Vicedomini, Francesco Andreace, Yoann Dufresne, Rayan Chikhi, Camila Duitama González

Bioinformatics· March 2025

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Analysis of metagenomic data.
Shaopeng Liu, Judith S Rodriguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Francesco Andreace

Nat Rev Methods Primers· January 2025

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The backpack quotient filter: A dynamic and space-efficient data structure for querying -mers with abundance.
Victor Levallois, Francesco Andreace, Bertrand Le Gal, Yoann Dufresne, Pierre Peterlongo

iScience· December 2024

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Comparing methods for constructing and representing human pangenome graphs.
Francesco Andreace, Pierre Lechat, Yoann Dufresne, Rayan Chikhi

Genome Biol· November 2023

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MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics.
Francesco Andreace, Cinzia Pizzi, Matteo Comin

J Comput Biol· November 2021

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