Publications by authors named "Matteo Comin"

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MISSH: Fast Hashing of Multiple Spaced Seeds.
Eleonora Mian, Enrico Petrucci, Cinzia Pizzi, Matteo Comin

IEEE/ACM Trans Comput Biol Bioinform· April 2025

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Enhanced Compression of -Mer Sets with Counters via de Bruijn Graphs.
Enrico Rossignolo, Matteo Comin

J Comput Biol· June 2024

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ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs.
Margherita Cavattoni, Matteo Comin

J Comput Biol· June 2023

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SPRISS: approximating frequent k-mers by sampling reads, and applications.
Diego Santoro, Leonardo Pellegrina, Matteo Comin, Fabio Vandin

Bioinformatics· June 2022

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K2Mem: Discovering Discriminative K-mers From Sequencing Data for Metagenomic Reads Classification.
Davide Storato, Matteo Comin

IEEE/ACM Trans Comput Biol Bioinform· February 2022

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Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21).
Jens Allmer, Mourad Elloumi, Matteo Comin, Ralf Hofestädt

J Integr Bioinform· December 2021

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MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics.
Francesco Andreace, Cinzia Pizzi, Matteo Comin

J Comput Biol· November 2021

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Fast alignment of reads to a variation graph with application to SNP detection.
Maurilio Monsu, Matteo Comin

J Integr Bioinform· November 2021

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Comparison of microbiome samples: methods and computational challenges.
Matteo Comin, Barbara Di Camillo, Cinzia Pizzi, Fabio Vandin

Brief Bioinform· January 2021

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Iterative Spaced Seed Hashing: Closing the Gap Between Spaced Seed Hashing and -mer Hashing.
Enrico Petrucci, Laurent Noé, Cinzia Pizzi, Matteo Comin

J Comput Biol· February 2020

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MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage.
Jia Qian, Matteo Comin

BMC Bioinformatics· November 2019

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Better quality score compression through sequence-based quality smoothing.
Yoshihiro Shibuya, Matteo Comin

BMC Bioinformatics· November 2019

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Indexing -mers in linear space for quality value compression.
Yoshihiro Shibuya, Matteo Comin

J Bioinform Comput Biol· October 2019

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Benchmarking of alignment-free sequence comparison methods.
Andrzej Zielezinski, Hani Z Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Matteo Comin

Genome Biol· July 2019

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Efficient computation of spaced seed hashing with block indexing.
Samuele Girotto, Matteo Comin, Cinzia Pizzi

BMC Bioinformatics· November 2018

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FSH: fast spaced seed hashing exploiting adjacent hashes.
Samuele Girotto, Matteo Comin, Cinzia Pizzi

Algorithms Mol Biol· March 2018

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Higher recall in metagenomic sequence classification exploiting overlapping reads.
Samuele Girotto, Matteo Comin, Cinzia Pizzi

BMC Genomics· December 2017

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MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
Samuele Girotto, Cinzia Pizzi, Matteo Comin

Bioinformatics· September 2016

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Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality values.
Matteo Comin, Michele Schimd

BMC Med Genomics· August 2016

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Fast Entropic Profiler: An Information Theoretic Approach for the Discovery of Patterns in Genomes.
Matteo Comin, Morris Antonello

IEEE/ACM Trans Comput Biol Bioinform· March 2016

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Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison.
Matteo Comin, Davide Verzotto

IEEE/ACM Trans Comput Biol Bioinform· March 2016

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On the comparison of regulatory sequences with multiple resolution Entropic Profiles.
Matteo Comin, Morris Antonello

BMC Bioinformatics· March 2016

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Clustering of reads with alignment-free measures and quality values.
Matteo Comin, Andrea Leoni, Michele Schimd

Algorithms Mol Biol· February 2015

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Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns.
Matteo Comin, Michele Schimd

BMC Bioinformatics· December 2014

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Parallel continuous flow: a parallel suffix tree construction tool for whole genomes.
Matteo Comin, Montse Farreras

J Comput Biol· April 2014

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