Publications by authors named "Gabriel A Pratt"

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Adopting duplex sequencing technology for genetic toxicity testing: A proof-of-concept mutagenesis experiment with N-ethyl-N-nitrosourea (ENU)-exposed rats.
Stephanie L Smith-Roe, Cheryl A Hobbs, Victoria Hull, J Todd Auman, Leslie Recio, Gabriel A Pratt

Mutat Res Genet Toxicol Environ Mutagen· October 2023

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Adopting Duplex Sequencing™ Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed Rats.
Stephanie L Smith-Roe, Cheryl A Hobbs, Victoria Hull, J Todd Auman, Leslie Recio, Gabriel A Pratt

bioRxiv· May 2023

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Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.
Steven M Blue, Brian A Yee, Gabriel A Pratt, Jasmine R Mueller, Samuel S Park

Nat Protoc· May 2022

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Author Correction: A large-scale binding and functional map of human RNA-binding proteins.
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei

Nature· January 2021

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Large-scale tethered function assays identify factors that regulate mRNA stability and translation.
En-Ching Luo, Jason L Nathanson, Frederick E Tan, Joshua L Schwartz, Jonathan C Schmok, Gabriel A Pratt

Nat Struct Mol Biol· October 2020

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A large-scale binding and functional map of human RNA-binding proteins.
Eric L Van Nostrand, Peter Freese, Gabriel A Pratt, Xiaofeng Wang, Xintao Wei

Nature· July 2020

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Regulation of RNA editing by RNA-binding proteins in human cells.
Giovanni Quinones-Valdez, Stephen S Tran, Hyun-Ik Jun, Jae Hoon Bahn, Ei-Wen Yang, Gabriel A Pratt

Commun Biol· May 2020

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Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins.
Eric L Van Nostrand, Gabriel A Pratt, Brian A Yee, Emily C Wheeler, Steven M Blue

Genome Biol· April 2020

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Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA.
Ei-Wen Yang, Jae Hoon Bahn, Esther Yun-Hua Hsiao, Boon Xin Tan, Yiwei Sun, Gabriel A Pratt

Nat Commun· March 2019

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RBP-Maps enables robust generation of splicing regulatory maps.
Brian A Yee, Gabriel A Pratt, Brenton R Graveley, Eric L Van Nostrand, Gene W Yeo

RNA· February 2019

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Widespread RNA editing dysregulation in brains from autistic individuals.
Stephen S Tran, Hyun-Ik Jun, Jae Hoon Bahn, Adel Azghadi, Gokul Ramaswami, Gabriel A Pratt

Nat Neurosci· January 2019

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Sequence, Structure, and Context Preferences of Human RNA Binding Proteins.
Daniel Dominguez, Peter Freese, Maria S Alexis, Amanda Su, Myles Hochman, Gabriel A Pratt

Mol Cell· June 2018

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Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).
Eric L Van Nostrand, Thai B Nguyen, Chelsea Gelboin-Burkhart, Ruth Wang, Steven M Blue, Gabriel A Pratt

Methods Mol Biol· April 2018

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Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions.
Eric L Van Nostrand, Alexander A Shishkin, Gabriel A Pratt, Thai B Nguyen, Gene W Yeo

Methods· August 2017

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CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.
Eric L Van Nostrand, Chelsea Gelboin-Burkhart, Ruth Wang, Gabriel A Pratt, Steven M Blue

Methods· April 2017

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Erratum to: Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).
Eric L Van Nostrand, Thai B Nguyen, Chelsea Gelboin-Burkhart, Ruth Wang, Steven M Blue, Gabriel A Pratt

Methods Mol Biol· January 2017

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Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System.
Fernando J Martinez, Gabriel A Pratt, Eric L Van Nostrand, Ranjan Batra, Stephanie C Huelga

Neuron· November 2016

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SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.
Kristopher W Brannan, Wenhao Jin, Stephanie C Huelga, Charles A S Banks, Joshua M Gilmore, Gabriel A Pratt

Mol Cell· October 2016

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Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses.
Katannya Kapeli, Gabriel A Pratt, Anthony Q Vu, Kasey R Hutt, Fernando J Martinez

Nat Commun· July 2016

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Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).
Eric L Van Nostrand, Gabriel A Pratt, Alexander A Shishkin, Chelsea Gelboin-Burkhart, Mark Y Fang

Nat Methods· June 2016

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Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival.
Anne E Conway, Eric L Van Nostrand, Gabriel A Pratt, Stefan Aigner, Melissa L Wilbert

Cell Rep· April 2016

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Resources for the Comprehensive Discovery of Functional RNA Elements.
Balaji Sundararaman, Lijun Zhan, Steven M Blue, Rebecca Stanton, Keri Elkins, Gabriel A Pratt

Mol Cell· March 2016

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Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.
Suzanne R Lee, Gabriel A Pratt, Fernando J Martinez, Gene W Yeo, Jens Lykke-Andersen

Mol Cell· August 2015

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Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges.
Michael T Lovci, Dana Ghanem, Henry Marr, Justin Arnold, Sherry Gee, Gabriel A Pratt

Nat Struct Mol Biol· December 2013

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Evidence that gene activation and silencing during stem cell differentiation requires a transcriptionally paused intermediate state.
Jonathan L Golob, Roshan M Kumar, Matthew G Guenther, Lil M Pabon, Gabriel A Pratt

PLoS One· January 2012

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