Publications by authors named "Brian A Yee"

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The IFIT2-IFIT3 antiviral complex targets short 5' untranslated regions on viral mRNAs for translation inhibition.
Dustin R Glasner, Candace Todd, Brian Cook, Agustina D'Urso, Shivani Khosla, Brian A Yee

Nat Microbiol· November 2025

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Dosage-sensitive autoregulation promotes cardiomyocyte differentiation by maturing the transcriptome.
Mengmeng Huang, Feria A Ladha, Yunxia Wang, Michael A Trembley, Hui-Min Yin, Brian A Yee

bioRxiv· November 2025

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Genome-Wide Interrogation of SARS-CoV-2 RNA-Protein Interactions Uncovers Hidden Regulatory Sites.
Joy S Xiang, Karen X Zhao, Laliv Tadri, Kurt Tamaru, Brian A Yee

bioRxiv· May 2025

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Short 5' UTRs serve as a marker for viral mRNA translation inhibition by the IFIT2-IFIT3 antiviral complex.
Dustin R Glasner, Candace Todd, Brian Cook, Agustina D'Urso, Shivani Khosla, Brian A Yee

bioRxiv· February 2025

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LARP6 regulates the mRNA translation of fibrogenic genes in liver fibrosis.
Hyun Young Kim, Orel Mizrahi, Wonseok Lee, Sara B Rosenthal, Cuijuan Han, Brian A Yee

bioRxiv· January 2025

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Long-read Ribo-STAMP simultaneously measures transcription and translation with isoform resolution.
Pratibha Jagannatha, Alexandra T Tankka, Daniel A Lorenz, Tao Yu, Brian A Yee

Genome Res· November 2024

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High-sensitivity in situ capture of endogenous RNA-protein interactions in fixed cells and primary tissues.
Qishan Liang, Tao Yu, Eric Kofman, Pratibha Jagannatha, Kevin Rhine, Brian A Yee

Nat Commun· August 2024

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Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes.
Platon Megagiannis, Yuan Mei, Rachel E Yan, Lin Yuan, Jonathan J Wilde, Brian A Yee

Cell Rep· August 2024

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Epistatic interactions between NMD and TRP53 control progenitor cell maintenance and brain size.
Lin Lin, Jingrong Zhao, Naoto Kubota, Zhelin Li, Yi-Li Lam, Brian A Yee

Neuron· July 2024

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Protocol to process crosslinking and immunoprecipitation data into annotated binding sites.
Shuhao Xu, Grady G Nguyen, Jack T Naritomi, Hema M Kopalle, Brian A Yee

STAR Protoc· June 2024

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A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.
Eray Enustun, Emily G Armbruster, Jina Lee, Sitao Zhang, Brian A Yee

Nucleic Acids Res· May 2024

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Transcriptome regulation by PARP13 in basal and antiviral states in human cells.
Veronica F Busa, Yoshinari Ando, Stefan Aigner, Brian A Yee, Gene W Yeo

iScience· April 2024

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Seryl-tRNA synthetase promotes translational readthrough by mRNA binding and involvement of the selenocysteine incorporation machinery.
Ze Liu, Justin Wang, Yi Shi, Brian A Yee, Markus Terrey

Nucleic Acids Res· October 2023

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A super-enhancer-regulated RNA-binding protein cascade drives pancreatic cancer.
Corina E Antal, Tae Gyu Oh, Stefan Aigner, En-Ching Luo, Brian A Yee

Nat Commun· September 2023

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A phage nucleus-associated RNA-binding protein is required for jumbo phage infection.
Eray Enustun, Emily G Armbruster, Jina Lee, Sitao Zhang, Brian A Yee

bioRxiv· September 2023

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Pyruvate Kinase M (PKM) binds ribosomes in a poly-ADP ribosylation dependent manner to induce translational stalling.
Nevraj S Kejiou, Lena Ilan, Stefan Aigner, Enching Luo, Tori Tonn, Brian A Yee

Nucleic Acids Res· July 2023

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In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target.
Ana Vujovic, Laura de Rooij, Ava Keyvani Chahi, He Tian Chen, Brian A Yee

Blood Cancer Discov· May 2023

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RNA binding protein DDX5 restricts RORγt T suppressor function to promote intestine inflammation.
Shengyun Ma, Qiyuan Yang, Nicholas Chen, Anna Zheng, Nazia Abbasi, Brian A Yee

Sci Adv· February 2023

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Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death.
Waqar Arif, Bhoomika Mathur, Michael F Saikali, Ullas V Chembazhi, Katelyn Toohill, Brian A Yee, Sayeepriyadarshini Anakk

Nat Commun· February 2023

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Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP.
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt, Brian A Yee

Nat Methods· January 2023

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The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.
Carlos G Gonzalez, Robert H Mills, Melissa C Kordahi, Marvic Carrillo-Terrazas, Henry Secaira-Morocho, Brian A Yee

Cell Mol Gastroenterol Hepatol· June 2022

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Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq.
Steven M Blue, Brian A Yee, Gabriel A Pratt, Jasmine R Mueller, Samuel S Park

Nat Protoc· May 2022

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Crosstalk between CRISPR-Cas9 and the human transcriptome.
Aaron A Smargon, Assael A Madrigal, Brian A Yee, Kevin D Dong, Jasmine R Mueller

Nat Commun· March 2022

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Identification of the global miR-130a targetome reveals a role for TBL1XR1 in hematopoietic stem cell self-renewal and t(8;21) AML.
Gabriela Krivdova, Veronique Voisin, Erwin M Schoof, Sajid A Marhon, Alex Murison, Brian A Yee

Cell Rep· March 2022

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Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.
Joy S Xiang, Jasmine R Mueller, En-Ching Luo, Brian A Yee, Danielle Schafer

Res Sq· March 2022

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