Publications by authors named "Hsuan-Lin Her"

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KIF5A binds RNA to orchestrate synaptic mRNA localization and stress granules in ALS.
Phuong Le, Neeraj K Lal, Shuhao Xu, Sara Mumford, Megan Huang, Katherine Rothamel, Hsuan-Lin Her

bioRxiv· November 2025

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Neuronal aging causes mislocalization of splicing proteins and unchecked cellular stress.
Kevin Rhine, Rachel Li, Hema M Kopalle, Katherine Rothamel, Xuezhen Ge, Hsuan-Lin Her, Anita Hermann

Nat Neurosci· June 2025

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Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion.
Jonathan C Schmok, Manya Jain, Lena A Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her

Nat Biotechnol· September 2024

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Author Correction: Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion.
Jonathan C Schmok, Manya Jain, Lena A Street, Alex T Tankka, Danielle Schafer, Hsuan-Lin Her

Nat Biotechnol· September 2024

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LARP4 is an RNA-binding protein that binds nuclear-encoded mitochondrial mRNAs to promote mitochondrial function.
Benjamin M Lewis, Chae Yun Cho, Hsuan-Lin Her, Orel Mizrahi, Tony Hunter

RNA· February 2024

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Remodeling oncogenic transcriptomes by small molecules targeting NONO.
Stefan G Kathman, Seong Joo Koo, Garrett L Lindsey, Hsuan-Lin Her, Steven M Blue

Nat Chem Biol· July 2023

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Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites.
Evan A Boyle, Hsuan-Lin Her, Jasmine R Mueller, Jack T Naritomi, Grady G Nguyen

Cell Genom· June 2023

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Proteomic discovery of chemical probes that perturb protein complexes in human cells.
Michael R Lazear, Jarrett R Remsberg, Martin G Jaeger, Katherine Rothamel, Hsuan-Lin Her, Christopher J Reinhardt

Mol Cell· May 2023

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Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP.
Daniel A Lorenz, Hsuan-Lin Her, Kylie A Shen, Katie Rothamel, Kasey R Hutt

Nat Methods· January 2023

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Metadensity: a background-aware python pipeline for summarizing CLIP signals on various transcriptomic sites.
Hsuan-Lin Her, Evan Boyle, Gene W Yeo

Bioinform Adv· November 2022

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Inferring a spatial code of cell-cell interactions across a whole animal body.
Erick Armingol, Abbas Ghaddar, Chintan J Joshi, Hratch Baghdassarian, Isaac Shamie, Hsuan-Lin Her

PLoS Comput Biol· November 2022

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Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.
Joy S Xiang, Jasmine R Mueller, En-Ching Luo, Brian A Yee, Danielle Schafer, Katherine Rothamel, Hsuan-Lin Her, Kristopher W Brannan

Res Sq· March 2022

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Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions.
Joy S Xiang, Jasmine R Mueller, En-Ching Luo, Brian A Yee, Danielle Schafer, Katherine Rothamel, Hsuan-Lin Her, Kristopher W Brannan

bioRxiv· February 2022

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PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains.
Hsuan-Lin Her, Po-Ting Lin, Yu-Wei Wu

BMC Bioinformatics· November 2021

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A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains.
Hsuan-Lin Her, Yu-Wei Wu

Bioinformatics· July 2018

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