Publications by authors named "GongXin Yu"

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Global Metabolite Profiling in Feces, Serum, and Urine Yields Insights into Energy Balance Phenotypes Induced by Diet-Driven Microbiome Remodeling.
Daria Igudesman, GongXin Yu, Tumpa Dutta, Elvis A Carnero, Rosa Krajmalnik-Brown

Am J Clin Nutr· October 2025

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Microbiota encroachment and a gut-adipose-liver axis in metabolic dysfunction-associated steatotic liver disease.
Daria Igudesman, GongXin Yu, Charlene Dauriat, Torfay Roman, Maryam R Kashi

Am J Physiol Gastrointest Liver Physiol· July 2025

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Exercise alters molecular profiles of inflammation and substrate metabolism in human white adipose tissue.
Maria F Pino, Pieter Dijkstra, Katie L Whytock, Cheehoon Ahn, Gongxin Yu

Am J Physiol Endocrinol Metab· March 2025

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Global metabolite profiling in feces, serum, and urine yields insights into energy balance phenotypes induced by diet-driven microbiome remodeling.
Daria Igudesman, GongXin Yu, Tumpa Dutta, Elvis A Carnero, Rosa Krajmalnik-Brown

medRxiv· February 2025

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Comprehensive interrogation of human skeletal muscle reveals a dissociation between insulin resistance and mitochondrial capacity.
Katie L Whytock, Maria F Pino, Yifei Sun, GongXin Yu, Flavia G De Carvalho

Am J Physiol Endocrinol Metab· October 2023

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The proteome and phosphoproteome of circulating extracellular vesicle-enriched preparations are associated with characteristic clinical features in type 1 diabetes.
Anna Casu, Yury O Nunez Lopez, Gongxin Yu, Christopher Clifford, Anika Bilal

Front Endocrinol (Lausanne)· August 2023

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A single nuclei atlas of aging human abdominal subcutaneous white adipose tissue.
Lauren Sparks, Katie Whytock, Adeline Divoux, Yifei Sun, Maria Pino, Gongxin Yu

Res Sq· July 2023

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Isolation of nuclei from frozen human subcutaneous adipose tissue for full-length single-nuclei transcriptional profiling.
Katie L Whytock, Adeline Divoux, Yifei Sun, Meghan Hopf, Reichelle X Yeo, GongXin Yu

STAR Protoc· March 2023

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Single cell full-length transcriptome of human subcutaneous adipose tissue reveals unique and heterogeneous cell populations.
Katie L Whytock, Yifei Sun, Adeline Divoux, GongXin Yu, Steven R Smith

iScience· August 2022

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Pancreatic Ductal Adenocarcinoma (PDAC) circulating tumor cells influence myeloid cell differentiation to support their survival and immunoresistance in portal vein circulation.
Juan Pablo Arnoletti, Joseph Reza, Armando Rosales, Alberto Monreal, Na'im Fanaian, Gongxin Yu

PLoS One· May 2022

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Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults.
Aliza B Rubenstein, J Matthew Hinkley, Venugopalan D Nair, German Nudelman, Robert A Standley, GongXin Yu

Am J Physiol Endocrinol Metab· March 2022

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A Metabolomic Signature of Glucagon Action in Healthy Individuals With Overweight/Obesity.
Rick B Vega, Katie L Whytock, Johan Gassenhuber, Britta Goebel, Joachim Tillner, Gongxin Yu

J Endocr Soc· September 2021

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Skeletal Muscle Energetics and Mitochondrial Function Are Impaired Following 10 Days of Bed Rest in Older Adults.
Robert A Standley, Giovanna Distefano, Michelle B Trevino, Emily Chen, Niven R Narain, Gongxin Yu

J Gerontol A Biol Sci Med Sci· September 2020

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An improvement in skeletal muscle mitochondrial capacity with short-term aerobic training is associated with changes in Tribbles 1 expression.
Rick B Vega, Bram Brouwers, Stephanie A Parsons, Natalie A Stephens, Maria F Pino, Gongxin Yu

Physiol Rep· June 2020

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Loss of mitochondrial energetics is associated with poor recovery of muscle function but not mass following disuse atrophy.
Michelle B Trevino, Xiaolei Zhang, Robert A Standley, Miao Wang, Xianlin Han, Gongxin Yu

Am J Physiol Endocrinol Metab· November 2019

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Developmental and transcriptional responses of maize to drought stress under field conditions.
Olga N Danilevskaya, GongXin Yu, Xin Meng, John Xu, Elizabeth Stephenson

Plant Direct· May 2019

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tassel-less1 encodes a boron channel protein required for inflorescence development in maize.
April Leonard, Beth Holloway, Mei Guo, Mary Rupe, GongXin Yu

Plant Cell Physiol· June 2014

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Gnom(Cmp): a quantitative approach for comparative analysis of closely related genomes of bacterial pathogens.
GongXin Yu

Genome· May 2011

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New implications on genomic adaptation derived from the Helicobacter pylori genome comparison.
Edgar Eduardo Lara-Ramírez, Aldo Segura-Cabrera, Xianwu Guo, Gongxin Yu, Carlos Armando García-Pérez

PLoS One· February 2011

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GenHtr: a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing.
Gongxin Yu

BMC Bioinformatics· October 2010

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An exon-based comparative variant analysis pipeline to study the scale and role of frameshift and nonsense mutation in the human-chimpanzee divergence.
GongXin Yu

Comp Funct Genomics· June 2010

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Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes.
Oswald R Crasta, Otto Folkerts, Zhangjun Fei, Shrinivasrao P Mane, Clive Evans, GongXin Yu

PLoS One· May 2008

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An SVM-based algorithm for identification of photosynthesis-specific genome features.
Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F Samatova

Proc IEEE Comput Soc Bioinform Conf· August 2006

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An evolution-based analysis scheme to identify CO2/O2 specificity-determining factors for ribulose 1,5-bisphosphate carboxylase/oxygenase.
Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F Samatova

Protein Eng Des Sel· December 2005

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In silico discovery of enzyme-substrate specificity-determining residue clusters.
Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Rajesh Munavalli, Al Geist

J Mol Biol· October 2005

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