Publications by authors named "Gordon Simpson"

Claim this Profile
D
Disruption of the mRNA m6A writer complex triggers autoimmunity in Arabidopsis.
Carey L Metheringham, Anjil K Srivastava, Peter Thorpe, Ankita Maji, Matthew T Parker, Gordon G Simpson

PLoS Genet· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
RNA splicing: a split consensus reveals two major 5' splice site classes.
Matthew T Parker, Sebastian M Fica, Gordon G Simpson

Open Biol· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
U
U6 snRNA m6A modification is required for accurate and efficient splicing of C. elegans and human pre-mRNAs.
Aykut Shen, Katarzyna Hencel, Matthew T Parker, Robyn Scott, Roberta Skukan, Gordon G Simpson

Nucleic Acids Res· August 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K.
Matthew T Parker, Sebastian M Fica, Geoffrey J Barton, Gordon G Simpson

Elife· October 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
U
U6 snRNA m6A modification is required for accurate and efficient cis- and trans-splicing of mRNAs.
Aykut Shen, Katarzyna Hencel, Matthew T Parker, Robyn Scott, Roberta Skukan, Gordon G Simpson

bioRxiv· September 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
mA modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site.
Matthew T Parker, Beth K Soanes, Jelena Kusakina, Antoine Larrieu, Katarzyna Knop, Gordon G Simpson

Elife· November 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Jessen V Bredeson, Jessica B Lyons, Ibukun O Oniyinde, Nneka R Okereke, Olufisayo Kolade, Gordon G Simpson

Nat Commun· April 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Two zinc finger proteins with functions in mA writing interact with HAKAI.
Mi Zhang, Zsuzsanna Bodi, Katarzyna Mackinnon, Silin Zhong, Nathan Archer, Gordon G Simpson

Nat Commun· March 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
W
Widespread premature transcription termination of NLR genes by the spen protein FPA.
Matthew T Parker, Katarzyna Knop, Vasiliki Zacharaki, Anna V Sherwood, Daniel Tomé, Gordon G Simpson

Elife· April 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
2
2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing.
Matthew T Parker, Katarzyna Knop, Geoffrey J Barton, Gordon G Simpson

Genome Biol· March 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Relative Abundance of Transcripts ( ): Identifying differential isoform abundance from RNA-seq.
Kimon Froussios, Kira Mourão, Gordon Simpson, Geoff Barton, Nicholas Schurch

F1000Res· June 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and mA modification.
Matthew T Parker, Katarzyna Knop, Anna V Sherwood, Nicholas J Schurch, Katarzyna Mackinnon, Gordon G Simpson

Elife· January 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana.
Kimon Froussios, Nick J Schurch, Katarzyna Mackinnon, Marek Gierliński, Céline Duc, Gordon G Simpson

Bioinformatics· September 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Crystal Structure of the SPOC Domain of the Arabidopsis Flowering Regulator FPA.
Yinglu Zhang, Katarzyna Rataj, Gordon G Simpson, Liang Tong

PLoS One· July 2017

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Erratum: How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Nicholas J Schurch, Pietà Schofield, Marek Gierliński, Christian Cole, Alexander Sherstnev, Gordon G Simpson

RNA· October 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?
Nicholas J Schurch, Pietá Schofield, Marek Gierliński, Christian Cole, Alexander Sherstnev, Gordon G Simpson

RNA· June 2016

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.
Marek Gierliński, Christian Cole, Pietà Schofield, Nicholas J Schurch, Alexander Sherstnev, Gordon Simpson

Bioinformatics· November 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The Arabidopsis epitranscriptome.
Rupert G Fray, Gordon G Simpson

Curr Opin Plant Biol· October 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Enter exitrons.
Dorothee Staiger, Gordon G Simpson

Genome Biol· July 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.
Nicholas J Schurch, Christian Cole, Alexander Sherstnev, Junfang Song, Céline Duc, Gordon G Simpson

PLoS One· January 2015

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Message ends: RNA 3' processing and flowering time control.
Katarzyna Rataj, Gordon G Simpson

J Exp Bot· February 2014

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation.
Rebecca Lyons, Akira Iwase, Thomas Gänsewig, Alexander Sherstnev, Céline Duc, Gordon G Simpson

Sci Rep· October 2013

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA.
Céline Duc, Alexander Sherstnev, Christian Cole, Geoffrey J Barton, Gordon G Simpson

PLoS Genet· October 2013

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis.
Ruben Vanholme, Igor Cesarino, Katarzyna Rataj, Yuguo Xiao, Lisa Sundin, Gordon G Simpson

Science· September 2013

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.
Alexander Sherstnev, Céline Duc, Christian Cole, Vasiliki Zacharaki, Csaba Hornyik, Gordon G Simpson

Nat Struct Mol Biol· August 2012

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis