Publications by authors named "Gregg Thomas"

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The Genomic Landscape, Causes, and Consequences of Extensive Phylogenomic Discordance in Murine Rodents.
Gregg W C Thomas, Jonathan J Hughes, Tomohiro Kumon, Jacob S Berv, C Erik Nordgren

Genome Biol Evol· February 2025

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Sperm competition intensity shapes divergence in both sperm morphology and reproductive genes across murine rodents.
Emily E K Kopania, Gregg W C Thomas, Carl R Hutter, Sebastian M E Mortimer, Colin M Callahan

Evolution· December 2024

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Practical Guidance and Workflows for Identifying Fast Evolving Non-Coding Genomic Elements Using PhyloAcc.
Gregg W C Thomas, Patrick Gemmell, Subir B Shakya, Zhirui Hu, Jun S Liu

Integr Comp Biol· November 2024

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Sperm competition intensity shapes divergence in both sperm morphology and reproductive genes across murine rodents.
Emily E K Kopania, Gregg W C Thomas, Carl R Hutter, Sebastian M E Mortimer, Colin M Callahan

bioRxiv· October 2024

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Rapid evolution of mitochondrion-related genes in haplodiploid arthropods.
Yiyuan Li, Gregg W C Thomas, Stephen Richards, Robert M Waterhouse, Xin Zhou

BMC Biol· October 2024

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Genomics and conservation: Guidance from training to analyses and applications.
Lauren M Schiebelhut, Annie S Guillaume, Arianna Kuhn, Rena M Schweizer, Ellie E Armstrong, Gregg W C Thomas

Mol Ecol Resour· February 2024

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A Fast, Reproducible, High-throughput Variant Calling Workflow for Population Genomics.
Cade D Mirchandani, Allison J Shultz, Gregg W C Thomas, Sara J Smith, Mara Baylis

Mol Biol Evol· January 2024

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PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance.
Han Yan, Zhirui Hu, Gregg W C Thomas, Scott V Edwards, Timothy B Sackton

Mol Biol Evol· September 2023

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The genomic landscape, causes, and consequences of extensive phylogenomic discordance in Old World mice and rats.
Gregg W C Thomas, Jonathan J Hughes, Tomohiro Kumon, Jacob S Berv, C Erik Nordgren

bioRxiv· August 2023

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The Evolution of Widespread Recombination Suppression on the Dwarf Hamster (Phodopus) X Chromosome.
Emily C Moore, Gregg W C Thomas, Sebastian Mortimer, Emily E K Kopania, Kelsie E Hunnicutt

Genome Biol Evol· May 2022

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Erratum to: Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits.
Cheng Sun, Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Gregg W C Thomas

Mol Biol Evol· June 2021

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Origins and Long-Term Patterns of Copy-Number Variation in Rhesus Macaques.
Gregg W C Thomas, Richard J Wang, Jelena Nguyen, R Alan Harris, Muthuswamy Raveendran

Mol Biol Evol· April 2021

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Assessment of mobile source air toxics in an Environmental Justice Denver community adjacent to a freeway.
Michael C McCarthy, Anondo D Mukherjee, Michael Ogletree, Jonathan Furst, Marie I Gosselin, Gregg Thomas

J Air Waste Manag Assoc· February 2021

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Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits.
Cheng Sun, Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Gregg W C Thomas

Mol Biol Evol· January 2021

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Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability.
Richard J Wang, Gregg W C Thomas, Muthuswamy Raveendran, R Alan Harris, Harshavardhan Doddapaneni

Genome Res· June 2020

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Tissue-specific expression profiles and positive selection analysis in the tree swallow (Tachycineta bicolor) using a de novo transcriptome assembly.
Alexandra B Bentz, Gregg W C Thomas, Douglas B Rusch, Kimberly A Rosvall

Sci Rep· November 2019

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Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise.
Stefan Prost, Ellie E Armstrong, Johan Nylander, Gregg W C Thomas, Alexander Suh

Gigascience· May 2019

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Referee: Reference Assembly Quality Scores.
Gregg W C Thomas, Matthew W Hahn

Genome Biol Evol· May 2019

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Evolution of salivary glue genes in Drosophila species.
Jean-Luc Da Lage, Gregg W C Thomas, Magalie Bonneau, Virginie Courtier-Orgogozo

BMC Evol Biol· January 2019

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Reproductive Longevity Predicts Mutation Rates in Primates.
Gregg W C Thomas, Richard J Wang, Arthi Puri, R Alan Harris, Muthuswamy Raveendran

Curr Biol· October 2018

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Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly.
Wesley C Warren, Raquel García-Pérez, Sen Xu, Kathrin P Lampert, Domitille Chalopin, Gregg C W Thomas

Nat Ecol Evol· April 2018

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Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host.
David Palesch, Steven E Bosinger, Gregory K Tharp, Thomas H Vanderford, Mirko Paiardini, Gregg W C Thomas

Nature· January 2018

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A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).
Sean D Schoville, Yolanda H Chen, Martin N Andersson, Joshua B Benoit, Anita Bhandari, Gregg W C Thomas

Sci Rep· January 2018

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The Effects of Increasing the Number of Taxa on Inferences of Molecular Convergence.
Gregg W C Thomas, Matthew W Hahn, Yoonsoo Hahn

Genome Biol Evol· January 2017

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