Publications by authors named "Scott V Edwards"

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Estimating Genome-Wide Phylogenies Using Probabilistic Topic Modeling.
Marzieh Khodaei, Scott V Edwards, Peter Beerli

Syst Biol· December 2025

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Draft genome of the Crimson rosella (Platycercus elegans elegans), an Australian parrot and key resource for the study of host-pathogen interaction in Psittaciformes.
Candice Lachenicht, Flavia Termignoni-Garcia, Mathew L Berg, Scott V Edwards, Andrew T D Bennett

BMC Genom Data· December 2025

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Multispecies pangenomes reveal a pervasive influence of population size on structural variation.
Scott V Edwards, Bohao Fang, Danielle Khost, George E Kolyfetis, Rebecca G Cheek

Science· December 2025

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Neo-sex Chromosomes Track the Mitochondrial Phylogeny and Exhibit an Extensive Added Stratum of Recombination Suppression in Honeyeaters (Aves: Meliphagidae).
Sophia C M Orzechowski, Doaa Doudin, Foyez Shams, C Jonathan Schmitt, Alex Drew, Scott V Edwards

Genome Biol Evol· November 2025

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The value of structural variants to conservation genomics in the pangenome era.
Teresa M Pegan, Ashwin Sivakumar, Christian Burns, Kelsie A Lopez, Bohao Fang, Scott V Edwards

J Hered· November 2025

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The genomic basis of plumage polymorphism in the Eastern Screech-Owl (Megascops asio).
Bryce W Robinson, Sarah Kurtis, Bronwyn G Butcher, Scott V Edwards, Irby J Lovette

Evolution· October 2025

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New fossils imply a deeper origin of modern birds in the Mesozoic.
Shaoyuan Wu, Ziqi Tao, Liang Liu, Charles R Marshall, Scott V Edwards

Natl Sci Rev· July 2025

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Convergent evolution of noncoding elements associated with short tarsus length in birds.
Subir B Shakya, Scott V Edwards, Timothy B Sackton

BMC Biol· February 2025

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Comparative population pangenomes reveal unexpected complexity and fitness effects of structural variants.
Scott V Edwards, Bohao Fang, Danielle Khost, George E Kolyfetis, Rebecca G Cheek

bioRxiv· February 2025

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Effects of plastic ingestion on blood chemistry, gene expression and body condition in wedge-tailed shearwaters ().
Nicole Mejia, Flavia Termignoni-Garcia, Jennifer Learned, Jay Penniman, Scott V Edwards

PeerJ· December 2024

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Practical Guidance and Workflows for Identifying Fast Evolving Non-Coding Genomic Elements Using PhyloAcc.
Gregg W C Thomas, Patrick Gemmell, Subir B Shakya, Zhirui Hu, Jun S Liu, Scott V Edwards

Integr Comp Biol· November 2024

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Fitness consequences of structural variation inferred from a House Finch pangenome.
Bohao Fang, Scott V Edwards

Proc Natl Acad Sci U S A· November 2024

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Estimating Genome-wide Phylogenies Using Probabilistic Topic Modeling.
Marzieh Khodaei, Scott V Edwards, Peter Beerli

bioRxiv· November 2024

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Tadpoles rely on mechanosensory stimuli for communication when visual capabilities are poor.
Julie M Butler, Jordan E McKinney, Sarah C Ludington, Moremi Mabogunje, Penelope Baker, Scott V Edwards

Dev Biol· October 2024

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Mitogenomics clarifies the position of the Nearctic magpies ( and ) within the Holarctic magpie radiation.
Alexey P Kryukov, Kirill A Kryukov, Kathleen Collier, Bohao Fang, Scott V Edwards

Curr Zool· October 2024

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Reply to Claramunt et al.: Robustness of the Cretaceous radiation of crown aves.
Shaoyuan Wu, Frank E Rheindt, Jin Zhang, Jiajia Wang, Lei Zhang, Scott V Edwards

Proc Natl Acad Sci U S A· September 2024

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Reply to Springer and Gatesy: The impact of long branches and misalignments on phylogenetic analysis is minimal.
Shaoyuan Wu, Frank E Rheindt, Jin Zhang, Jiajia Wang, Lei Zhang, Scott V Edwards

Proc Natl Acad Sci U S A· July 2024

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A nuclear genome assembly of an extinct flightless bird, the little bush moa.
Scott V Edwards, Alison Cloutier, Glenn Cockburn, Robert Driver, Phil Grayson

Sci Adv· May 2024

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slimr: An R package for tailor-made integrations of data in population genomic simulations over space and time.
Russell Dinnage, Stephen D Sarre, Richard P Duncan, Christopher R Dickman, Scott V Edwards

Mol Ecol Resour· April 2024

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Boom-bust population dynamics drive rapid genetic change.
Emily J Stringer, Bernd Gruber, Stephen D Sarre, Glenda M Wardle, Scott V Edwards

Proc Natl Acad Sci U S A· April 2024

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A phylogenetic method linking nucleotide substitution rates to rates of continuous trait evolution.
Patrick Gemmell, Timothy B Sackton, Scott V Edwards, Jun S Liu

PLoS Comput Biol· April 2024

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Genetic Basis and Evolution of Structural Color Polymorphism in an Australian Songbird.
Simon Yung Wa Sin, Fushi Ke, Guoling Chen, Pei-Yu Huang, Erik D Enbody, Scott V Edwards

Mol Biol Evol· March 2024

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Genomes, fossils, and the concurrent rise of modern birds and flowering plants in the Late Cretaceous.
Shaoyuan Wu, Frank E Rheindt, Jin Zhang, Jiajia Wang, Lei Zhang, Scott V Edwards

Proc Natl Acad Sci U S A· February 2024

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Gene flow and an anomaly zone complicate phylogenomic inference in a rapidly radiated avian family (Prunellidae).
Zhiyong Jiang, Wenqing Zang, Per G P Ericson, Gang Song, Shaoyuan Wu, Scott V Edwards

BMC Biol· February 2024

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Specimen collection is essential for modern science.
Michael W Nachman, Elizabeth J Beckman, Rauri Ck Bowie, Carla Cicero, Chris J Conroy, Scott V Edwards

PLoS Biol· November 2023

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