Publications by authors named "Peter Beerli"

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Estimating Genome-Wide Phylogenies Using Probabilistic Topic Modeling.
Marzieh Khodaei, Scott V Edwards, Peter Beerli

Syst Biol· December 2025

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Estimating Genome-wide Phylogenies Using Probabilistic Topic Modeling.
Marzieh Khodaei, Scott V Edwards, Peter Beerli

bioRxiv· November 2024

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Geodesics to characterize the phylogenetic landscape.
Marzieh Khodaei, Megan Owen, Peter Beerli

PLoS One· June 2023

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The population genetics of speciation by cascade reinforcement.
Carlie B Anderson, Oscar Ospina, Peter Beerli, Alan R Lemmon, Sarah E Banker

Ecol Evol· February 2023

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Genetic diversity and population structure of Leishmania (Viannia) braziliensis in the Peruvian jungle.
Maxy B De Los Santos, Ivonne Melissa Ramírez, Jorge E Rodríguez, Peter Beerli, Hugo O Valdivia

PLoS Negl Trop Dis· May 2022

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Population divergence time estimation using individual lineage label switching.
Peter Beerli, Haleh Ashki, Somayeh Mashayekhi, Michal Palczewski

G3 (Bethesda)· April 2022

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Population Genetic Inference With MIGRATE.
Peter Beerli, Somayeh Mashayekhi, Marjan Sadeghi, Marzieh Khodaei, Kyle Shaw

Curr Protoc Bioinformatics· December 2019

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Fractional coalescent.
Somayeh Mashayekhi, Peter Beerli

Proc Natl Acad Sci U S A· March 2019

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A synthesis of genetic connectivity in deep-sea fauna and implications for marine reserve design.
Amy R Baco, Ron J Etter, Pedro A Ribeiro, Sophie von der Heyden, Peter Beerli

Mol Ecol· July 2016

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Strong and stable geographic differentiation of swamp buffalo maternal and paternal lineages indicates domestication in the China/Indochina border region.
Yi Zhang, Yongfang Lu, Marnoch Yindee, Kuan-Yi Li, Hsiao-Yun Kuo, Peter Beerli

Mol Ecol· April 2016

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Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci in the sea urchin Strongylocentrotus purpuratus.
Andres Plata Stapper, Peter Beerli, Don R Levitan

Mol Biol Evol· April 2015

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A continuous method for gene flow.
Michal Palczewski, Peter Beerli

Genetics· July 2013

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Balancing a cline by influx of migrants: a genetic transition in water frogs of eastern Greece.
Hansjürg Hotz, Peter Beerli, Thomas Uzzell, Gaston-Denis Guex, Nicolas B M Pruvost

J Hered· June 2013

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A possible explanation for the population size discrepancy in tuna (genus Thunnus) estimated from mitochondrial DNA and microsatellite data.
Fan Qiu, Andrew Kitchen, Peter Beerli, Michael M Miyamoto

Mol Phylogenet Evol· February 2013

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Biogeographic models of gene flow in two waterfowl of the Australo-Papuan tropics.
David A Roshier, Robert Heinsohn, Gregory J Adcock, Peter Beerli, Leo Joseph

Ecol Evol· November 2012

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BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.
Daniel L Ayres, Aaron Darling, Derrick J Zwickl, Peter Beerli, Mark T Holder

Syst Biol· January 2012

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Gene flow and population structure in the Mexican blind cavefish complex (Astyanax mexicanus).
Martina Bradic, Peter Beerli, Francisco J García-de León, Sarai Esquivel-Bobadilla, Richard L Borowsky

BMC Evol Biol· January 2012

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Genetic variation of Anastrepha suspensa (Diptera: Tephritidae) in Florida and the Caribbean using microsatellite DNA markers.
Laura M Boykin, Robert G Shatters, David G Hall, David Dean, Peter Beerli

J Econ Entomol· December 2010

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Phylogeographic patterns of genetic diversity in eastern Mediterranean water frogs have been determined by geological processes and climate change in the Late Cenozoic.
Ciğdem Akın, C Can Bilgin, Peter Beerli, Rob Westaway, Torsten Ohst

J Biogeogr· November 2010

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Unified framework to evaluate panmixia and migration direction among multiple sampling locations.
Peter Beerli, Michal Palczewski

Genetics· May 2010

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Global migration dynamics underlie evolution and persistence of human influenza A (H3N2).
Trevor Bedford, Sarah Cobey, Peter Beerli, Mercedes Pascual

PLoS Pathog· May 2010

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In defence of model-based inference in phylogeography.
Mark A Beaumont, Rasmus Nielsen, Christian Robert, Jody Hey, Oscar Gaggiotti, Peter Beerli

Mol Ecol· February 2010

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Evolution of serum albumin intron-1 is shaped by a 5' truncated non-long terminal repeat retrotransposon in western Palearctic water frogs (Neobatrachia).
Jörg Plötner, Frank Köhler, Thomas Uzzell, Peter Beerli, Robert Schreiber

Mol Phylogenet Evol· December 2009

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Genetic structuring and migration patterns of Atlantic bigeye tuna, Thunnus obesus (Lowe, 1839).
Elena G Gonzalez, Peter Beerli, Rafael Zardoya

BMC Evol Biol· September 2008

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Estimation of the population scaled mutation rate from microsatellite data.
Peter Beerli

Genetics· November 2007

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