Publications by authors named "Gregor Sturm"

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Analysis of single-cell TCR repertoires and gene expression from multi-modal scRNA-seq data.
Christina Plattner, Gregor Sturm, Dietmar Rieder

Methods Cell Biol· October 2025

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Integrated multimodel analysis of intestinal inflammation exposes key molecular features of preclinical and clinical IBD.
Miguel Gonzalez-Acera, Jay V Patankar, Lena Erkert, Roodline Cineus, Reyes Gamez-Belmonte, Gregor Sturm

Gut· September 2025

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Single-cell differential expression analysis between conditions within nested settings.
Leon Hafner, Gregor Sturm, Sarah Lumpp, Mathias Drton, Markus List

Brief Bioinform· July 2025

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IBDome: An integrated molecular, histopathological, and clinical atlas of inflammatory bowel diseases.
Zlatko Trajanoski, Christina Plattner, Gregor Sturm, Anja Kühl, Raja Atreya

Res Sq· May 2025

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IBDome: An integrated molecular, histopathological, and clinical atlas of inflammatory bowel diseases.
Christina Plattner, Gregor Sturm, Anja A Kühl, Raja Atreya, Sandro Carollo

bioRxiv· April 2025

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Epithelial OPA1 links mitochondrial fusion to inflammatory bowel disease.
Li-Li Bao, Yu-Qiang Yu, Miguel González-Acera, Jay V Patankar, Andreas Giessl, Gregor Sturm

Sci Transl Med· January 2025

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Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion.
Óscar Lapuente-Santana, Gregor Sturm, Joan Kant, Markus Ausserhofer, Constantin Zackl

iScience· August 2024

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Beyond binary: bridging neutrophil diversity to new therapeutic approaches in NSCLC.
Lena Horvath, Constanze Puschmann, Alexandra Scheiber, Agnieszka Martowicz, Gregor Sturm

Trends Cancer· May 2024

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Making mouse transcriptomics deconvolution accessible with immunedeconv.
Lorenzo Merotto, Gregor Sturm, Alexander Dietrich, Markus List, Francesca Finotello

Bioinform Adv· February 2024

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IL-20 controls resolution of experimental colitis by regulating epithelial IFN/STAT2 signalling.
Mircea Teodor Chiriac, Zsuzsanna Hracsko, Claudia Günther, Miguel Gonzalez-Acera, Raja Atreya, Gregor Sturm

Gut· January 2024

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Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer.
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Gregor Sturm

iScience· December 2023

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Single cell dynamics of tumor specificity vs bystander activity in CD8 T cells define the diverse immune landscapes in colorectal cancer.
Daniel Morales Borràs, Sara Verbandt, Markus Ausserhofer, Gregor Sturm, Jinyeong Lim

Cell Discov· November 2023

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A gut bacterial signature in blood and liver tissue characterizes cirrhosis and hepatocellular carcinoma.
Maria Effenberger, Silvio Waschina, Christina Bronowski, Gregor Sturm, Oronzo Tassiello

Hepatol Commun· July 2023

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The scverse project provides a computational ecosystem for single-cell omics data analysis.
Isaac Virshup, Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm

Nat Biotechnol· May 2023

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Interleukin 36 receptor-inducible matrix metalloproteinase 13 mediates intestinal fibrosis.
Kristina Koop, Karin Enderle, Miriam Hillmann, Laura Ruspeckhofer, Michael Vieth, Gregor Sturm

Front Immunol· May 2023

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Proteolytic Activity of the Paracaspase MALT1 Is Involved in Epithelial Restitution and Mucosal Healing.
Leonie Wittner, Lukas Wagener, Jakob J Wiese, Iris Stolzer, Susanne M Krug, Gregor Sturm

Int J Mol Sci· April 2023

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High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer.
Stefan Salcher, Gregor Sturm, Lena Horvath, Gerold Untergasser, Christiane Kuempers

Cancer Cell· December 2022

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SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition.
Alexander Dietrich, Gregor Sturm, Lorenzo Merotto, Federico Marini, Francesca Finotello

Bioinformatics· September 2022

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NKG2A is a late immune checkpoint on CD8 T cells and marks repeated stimulation and cell division.
Linda Borst, Marjolein Sluijter, Gregor Sturm, Pornpimol Charoentong, Saskia J Santegoets

Int J Cancer· February 2022

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Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival.
Ziena Abdulrahman, Saskia J Santegoets, Gregor Sturm, Pornpimol Charoentong, Marieke E Ijsselsteijn

J Immunother Cancer· February 2022

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CD161 expression and regulation defines rapidly responding effector CD4+ T cells associated with improved survival in HPV16-associated tumors.
Chantal L Duurland, Saskia J Santegoets, Ziena Abdulrahman, Nikki M Loof, Gregor Sturm

J Immunother Cancer· January 2022

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The AIMe registry for artificial intelligence in biomedical research.
Julian Matschinske, Nicolas Alcaraz, Arriel Benis, Martin Golebiewski, Dominik G Grimm, Gregor Sturm

Nat Methods· October 2021

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Tissue heterogeneity is prevalent in gene expression studies.
Gregor Sturm, Markus List, Jitao David Zhang

NAR Genom Bioinform· September 2021

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Dynamic, Transient, and Robust Increase in the Innervation of the Inflamed Mucosa in Inflammatory Bowel Diseases.
Miguel Gonzalez Acera, Marvin Bubeck, Fabrizio Mascia, Leonard Diemand, Gregor Sturm

Cells· August 2021

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CD39 Identifies the CD4 Tumor-Specific T-cell Population in Human Cancer.
Kim E Kortekaas, Saskia J Santegoets, Gregor Sturm, Ilina Ehsan, Sylvia L van Egmond

Cancer Immunol Res· October 2020

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