Publications by authors named "Haining Lin"

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Spatial transcriptomics identifies novel Pseudomonas aeruginosa virulence factors.
Hao Zhou, Oscar Negrón, Serena Abbondante, Michaela Marshall, Brandon Jones, Haining Lin

Cell Genom· March 2025

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Mechanism of action of Panax ginseng alcohol extract based on orexin-mediated autophagy in the treatment of sleep and cognition in aged sleep-deprived rats.
Haining Lin, Yunlong Xu, Huazhong Xiong, Lichao Wang, Yuqing Shi

J Ethnopharmacol· January 2025

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Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications.
Punna Ramu, Rakesh K Srivastava, Abhijit Sanyal, Kevin Fengler, Jun Cao, Haining Lin

Commun Biol· September 2023

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Bioinformatics analysis indicates that microRNA‑628‑5p overexpression may alleviate Alzheimer's disease by targeting TYROBP.
Miao Liu, Shuling Li, Chun Ma, Xinna Wang, Yu Shuang, Haining Lin

Mol Med Rep· February 2021

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Chromatin loop anchors contain core structural components of the gene expression machinery in maize.
Stéphane Deschamps, John A Crow, Nadia Chaidir, Brooke Peterson-Burch, Sunil Kumar, Haining Lin

BMC Genomics· January 2021

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A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping.
Stéphane Deschamps, Yun Zhang, Victor Llaca, Liang Ye, Abhijit Sanyal, Haining Lin

Nat Commun· November 2018

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Southern-by-Sequencing: A Robust Screening Approach for Molecular Characterization of Genetically Modified Crops.
Gina M Zastrow-Hayes, Haining Lin, Amy L Sigmund, Jenna L Hoffman, Clara M Alarcon

Plant Genome· March 2015

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Genome-wide analysis of branched-chain amino acid levels in Arabidopsis seeds.
Ruthie Angelovici, Alexander E Lipka, Nicholas Deason, Sabrina Gonzalez-Jorge, Haining Lin

Plant Cell· December 2013

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Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in Arabidopsis seeds.
Sabrina Gonzalez-Jorge, Sun-Hwa Ha, Maria Magallanes-Lundback, Laura Ullrich Gilliland, Ailing Zhou, Haining Lin

Plant Cell· December 2013

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Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain.
Alexander E Lipka, Michael A Gore, Maria Magallanes-Lundback, Alex Mesberg, Haining Lin

G3 (Bethesda)· August 2013

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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.
Yoshihiro Kawahara, Melissa de la Bastide, John P Hamilton, Hiroyuki Kanamori, W Richard McCombie, Haining Lin, Lina Quesada-Ocampo

Rice (N Y)· February 2013

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Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution.
Rebecca M Davidson, Malali Gowda, Gaurav Moghe, Haining Lin, Brieanne Vaillancourt

Plant J· August 2012

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The transcriptome of the reference potato genome Solanum tuberosum Group Phureja clone DM1-3 516R44.
Alicia N Massa, Kevin L Childs, Haining Lin, Glenn J Bryan, Giovanni Giuliano

PLoS One· March 2012

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Genome sequence and analysis of the tuber crop potato.

Nature· July 2011

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Genome-wide atlas of transcription during maize development.
Rajandeep S Sekhon, Haining Lin, Kevin L Childs, Candice N Hansey, C Robin Buell

Plant J· May 2011

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Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.
C André Lévesque, Henk Brouwer, Liliana Cano, John P Hamilton, Carson Holt, Elodie Gaulin, Haining Lin

Genome Biol· December 2010

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Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana.
Haining Lin, Gaurav Moghe, Shu Ouyang, Amy Iezzoni, Shin-Han Shiu

BMC Evol Biol· February 2010

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Characterization of paralogous protein families in rice.
Haining Lin, Shu Ouyang, Rain Simons, Kan Nobuta, Brian J Haas

BMC Plant Biol· February 2008

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Identification and characterization of lineage-specific genes within the Poaceae.
Matthew A Campbell, Wei Zhu, Ning Jiang, Haining Lin, Shu Ouyang

Plant Physiol· December 2007

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The TIGR Rice Genome Annotation Resource: improvements and new features.
Shu Ouyang, Wei Zhu, John Hamilton, Haining Lin, Matthew Campbell

Nucleic Acids Res· January 2007

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Intron gain and loss in segmentally duplicated genes in rice.
Haining Lin, Wei Zhu, Joana C Silva, Xun Gu, C Robin Buell

Genome Biol· August 2006

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The institute for genomic research Osa1 rice genome annotation database.
Qiaoping Yuan, Shu Ouyang, Aihui Wang, Wei Zhu, Rama Maiti, Haining Lin

Plant Physiol· May 2005

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