Publications by authors named "Stephane Deschamps"

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Spatial and single-cell transcriptomics capture two distinct cell states in soybean defense response to infection.
Yuzhao Hu, Raeann Schaefer, Michael Rendleman, Andrew Slattery, Annaliese Cramer, Stéphane Deschamps

Front Plant Sci· September 2025

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Small DNA elements can act as both insulators and silencers in plants.
Tobias Jores, Nicholas A Mueth, Jackson Tonnies, Si Nian Char, Bo Liu, Stéphane Deschamps

Plant Cell· June 2025

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Harnessing Single-Cell and Spatial Transcriptomics for Crop Improvement.
Yuzhao Hu, Linkan Dash, Gregory May, Nagesh Sardesai, Stéphane Deschamps

Plants (Basel)· December 2024

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Small DNA elements that act as both insulators and silencers in plants.
Tobias Jores, Nicholas A Mueth, Jackson Tonnies, Si Nian Char, Bo Liu, Stéphane Deschamps

bioRxiv· September 2024

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The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes.
Sergei S Ryazansky, Chujia Chen, Mark Potters, Anastasia N Naumenko, Varvara Lukyanchikova, Stéphane Deschamps

BMC Biol· January 2024

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Author Correction: Mapping the genomic landscape of CRISPR-Cas9 cleavage.
Peter Cameron, Chris K Fuller, Paul D Donohoue, Brittnee N Jones, Matthew S Thompson, Stéphane Deschamps

Nat Methods· December 2023

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The Splicing Factor PTBP1 Represses Isoform Production in Squamous Cell Carcinoma.
William Taylor, Stéphane Deschamps, David Reboutier, Luc Paillard, Agnès Méreau

Cancer Res Commun· December 2022

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The RNA-binding proteins CELF1 and ELAVL1 cooperatively control the alternative splicing of CD44.
Géraldine David, David Reboutier, Stéphane Deschamps, Agnès Méreau, William Taylor

Biochem Biophys Res Commun· October 2022

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Chromatin loop anchors contain core structural components of the gene expression machinery in maize.
Stéphane Deschamps, John A Crow, Nadia Chaidir, Brooke Peterson-Burch, Sunil Kumar

BMC Genomics· January 2021

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The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere.
Austin Compton, Jiangtao Liang, Chujia Chen, Varvara Lukyanchikova, Yumin Qi, Stéphane Deschamps

G3 (Bethesda)· October 2020

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CRISPR-Cas9 Editing in Maize: Systematic Evaluation of Off-target Activity and Its Relevance in Crop Improvement.
Joshua Young, Gina Zastrow-Hayes, Stéphane Deschamps, Sergei Svitashev, Mindaugas Zaremba

Sci Rep· April 2019

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A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping.
Stéphane Deschamps, Yun Zhang, Victor Llaca, Liang Ye, Abhijit Sanyal

Nat Commun· November 2018

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Bruno-3 regulates sarcomere component expression and contributes to muscle phenotypes of myotonic dystrophy type 1.
Lucie Picchio, Vincent Legagneux, Stephane Deschamps, Yoan Renaud, Sabine Chauveau

Dis Model Mech· May 2018

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Robust identification of Ptbp1-dependent splicing events by a junction-centric approach in Xenopus laevis.
Maud Noiret, Agnès Méreau, Gaëlle Angrand, Marion Bervas, Carole Gautier-Courteille, Stéphane Deschamps

Dev Biol· June 2017

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Mapping the genomic landscape of CRISPR-Cas9 cleavage.
Peter Cameron, Chris K Fuller, Paul D Donohoue, Brittnee N Jones, Matthew S Thompson, Stéphane Deschamps

Nat Methods· June 2017

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In Silico and Fluorescence In Situ Hybridization Mapping Reveals Collinearity between the Pennisetum squamulatum Apomixis Carrier-Chromosome and Chromosome 2 of Sorghum and Foxtail Millet.
Sirjan Sapkota, Joann A Conner, Wayne W Hanna, Bindu Simon, Kevin Fengler, Stéphane Deschamps

PLoS One· August 2016

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Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens.
Stéphane Deschamps, Joann Mudge, Connor Cameron, Thiruvarangan Ramaraj, Ajith Anand

Sci Rep· June 2016

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Sequencing and de novo draft assemblies of a fathead minnow (Pimephales promelas) reference genome.
Frank R Burns, Amarin L Cogburn, Gerald T Ankley, Daniel L Villeneuve, Eric Waits, Stephane D Deschamps

Environ Toxicol Chem· January 2016

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Eighteen New Candidate Effectors of the Phytonematode Heterodera glycines Produced Specifically in the Secretory Esophageal Gland Cells During Parasitism.
Jason B Noon, Tarek Hewezi, Thomas R Maier, Carl Simmons, Jun-Zhi Wei, Stéphane Deschamps

Phytopathology· October 2015

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Hypogonadism Associated with Cyp19a1 (Aromatase) Posttranscriptional Upregulation in Celf1 Knockout Mice.
Gaella Boulanger, Marie Cibois, Justine Viet, Alexis Fostier, Stéphane Deschamps

Mol Cell Biol· September 2015

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The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.
Michael Regulski, Zhenyuan Lu, Jude Kendall, Mark T A Donoghue, Jon Reinders, Stephane Deschamps

Genome Res· October 2013

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Involvement of ITIH5, a candidate gene for congenital uterovaginal aplasia (Mayer-Rokitansky-Küster-Hauser syndrome), in female genital tract development.
Karine Morcel, Tanguy Watrin, Frédérique Jaffre, Stéphane Deschamps, Francis Omilli

Gene Expr· April 2013

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Local assemblies of paired-end reduced representation libraries sequenced with the illumina genome analyzer in maize.
Stéphane Deschamps, Kishore Nannapaneni, Yun Zhang, Kevin Hayes

Int J Plant Genomics· October 2012

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Genotyping-by-Sequencing in Plants.
Stéphane Deschamps, Victor Llaca, Gregory D May

Biology (Basel)· September 2012

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Microwave-assisted extraction of lignin from triticale straw: optimization and microwave effects.
Fanny Monteil-Rivera, Guang Hai Huang, Louise Paquet, Stéphane Deschamps, Chantale Beaulieu

Bioresour Technol· January 2012

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