Publications by authors named "Hamza Balci"

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Liquid Crystalline Ordering of Banana-Shaped Gapped DNA Duplexes.
Sineth G Kodikara, Prabesh Gyawali, James T Gleeson, Antal Jakli, Samuel Sprunt, Hamza Balci

Biomacromolecules· December 2025

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Accessibility of Telomeric Overhangs to Stabilizing Small-Molecule Ligands.
Janan Alfehaid, Vidsara Surasinghe, Sineth G Kodikara, Mohammad L Kabir, Masayuki Tera, Hamza Balci

bioRxiv· December 2025

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Locked Nucleic Acid Stabilized Liquid Crystalline Phases.
Sineth G Kodikara, Samuel Sprunt, Hamza Balci

Langmuir· November 2025

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Impact of Molecular Crowding on Accessibility of Telomeric Overhangs Forming Multiple G-Quadruplexes.
Golam Mustafa, Sajad Shiekh, Janan Alfehaid, Sineth G Kodikara, Hamza Balci

Biomacromolecules· July 2025

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Impact of Molecular Crowding on Accessibility of Telomeric Overhangs Forming Multiple G-quadruplexes.
Golam Mustafa, Sajad Shiekh, Janan Alfehaid, Sineth G Kodikara, Hamza Balci

bioRxiv· May 2025

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Sequence-Dependent Liquid Crystalline Ordering of Gapped DNA.
Sineth G Kodikara, James T Gleeson, Antal Jakli, Samuel Sprunt, Hamza Balci

ACS Macro Lett· February 2025

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Duplex Unwinding Mechanism of Coronavirus MERS-CoV nsp13 Helicase.
Wei Hao, Xiao Hu, Qixin Chen, Bo Qin, Zhiqi Tian, Hamza Balci

Chem Biomed Imaging· February 2025

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Combining CRISPR activation and interference capabilities using dCas9 and G-quadruplex structures.
Mohammad Lutful Kabir, Sineth G Kodikara, Mohammed Enamul Hoque, Sajad Shiekh, Janan Alfehaid, Hamza Balci

NAR Mol Med· January 2025

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Combining the CRISPR Activation and Interference Capabilities Using dCas9 and G-Quadruplex Structures.
Mohammad Lutful Kabir, Sineth G Kodikara, Mohammed Enamul Hoque, Sajad Shiekh, Janan Alfehaid, Hamza Balci

bioRxiv· November 2024

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Reusable Microfluidic Chambers for Single-Molecule Microscopy.
Janan Alfehaid, Sineth G Kodikara, Tuqa Alhajri, Mohammad Lutful Kabir, Hamza Balci

ACS Appl Mater Interfaces· October 2024

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Protection of the Telomeric Junction by the Shelterin Complex.
Sajad Shiekh, Darion Feldt, Amanda Jack, Sineth G Kodikara, Janan Alfehaid, Hamza Balci

J Am Chem Soc· September 2024

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Protection of the Telomeric Junction by the Shelterin Complex.
Sajad Shiekh, Darion Feldt, Amanda Jack, Sineth G Kodikara, Janan Alfehaid, Hamza Balci

bioRxiv· August 2024

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Stalling of Transcription by Putative G-quadruplex Sequences and CRISPR-dCas9.
Mohammed Enamul Hoque, Mohammad Lutful Kabir, Sajad Shiekh, Hamza Balci, Soumitra Basu

bioRxiv· March 2024

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Impact of Divalent Cations on In-Layer Positional Order of DNA-Based Liquid Crystals: Implications for DNA Condensation.
Sineth G Kodikara, Prabesh Gyawali, James T Gleeson, Antal Jákli, Samuel Sprunt, Hamza Balci

Biomacromolecules· February 2024

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Structure, Topology, and Stability of Multiple G-quadruplexes in Long Telomeric Overhangs.
Sajad Shiekh, Sineth G Kodikara, Hamza Balci

J Mol Biol· January 2024

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Detecting secondary structure formation with FRET-PAINT.
Sineth G Kodikara, Kylie J Merkel, Simon J Haas, Sajad Shiekh, Hamza Balci

Analyst· September 2023

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Stability of End-to-End Base Stacking Interactions in Highly Concentrated DNA Solutions.
Sineth G Kodikara, Prabesh Gyawali, James T Gleeson, Antal Jakli, Samuel Sprunt, Hamza Balci

Langmuir· April 2023

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Shelterin reduces the accessibility of telomeric overhangs.
Sajad Shiekh, Amanda Jack, Ayush Saurabh, Golam Mustafa, Sineth G Kodikara, Hamza Balci

Nucleic Acids Res· December 2022

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Rtt105 regulates RPA function by configurationally stapling the flexible domains.
Sahiti Kuppa, Jaigeeth Deveryshetty, Rahul Chadda, Jenna R Mattice, Nilisha Pokhrel, Hamza Balci

Nat Commun· September 2022

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A single molecule investigation of i-motif stability, folding intermediates, and potential as pH sensor.
Golam Mustafa, Prabesh Gyawali, Jacob A Taylor, Parastoo Maleki, Marlon V Nunez, Hamza Balci

Front Mol Biosci· August 2022

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Emerging accessibility patterns in long telomeric overhangs.
Sajad Shiekh, Golam Mustafa, Sineth G Kodikara, Mohammed Enamul Hoque, Eric Yokie, Hamza Balci

Proc Natl Acad Sci U S A· July 2022

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Encounters between Cas9/dCas9 and G-Quadruplexes: Implications for Transcription Regulation and Cas9-Mediated DNA Cleavage.
Mohammed Enamul Hoque, Golam Mustafa, Soumitra Basu, Hamza Balci

ACS Synth Biol· May 2021

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Interrogating accessibility of telomeric sequences with FRET-PAINT: evidence for length-dependent telomere compaction.
Golam Mustafa, Sajad Shiekh, Keshav Gc, Sanjaya Abeysirigunawardena, Hamza Balci

Nucleic Acids Res· April 2021

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Targeting G-quadruplex Forming Sequences with Cas9.
Hamza Balci, Viktorija Globyte, Chirlmin Joo

ACS Chem Biol· April 2021

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Mono- and bilayer smectic liquid crystal ordering in dense solutions of "gapped" DNA duplexes.
Prabesh Gyawali, Rony Saha, Gregory P Smith, Miroslaw Salamonczyk, Prakash Kharel, Hamza Balci

Proc Natl Acad Sci U S A· March 2021

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