Publications by authors named "Soumitra Basu"

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Combining CRISPR activation and interference capabilities using dCas9 and G-quadruplex structures.
Mohammad Lutful Kabir, Sineth G Kodikara, Mohammed Enamul Hoque, Sajad Shiekh, Janan Alfehaid, Soumitra Basu

NAR Mol Med· January 2025

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Combining the CRISPR Activation and Interference Capabilities Using dCas9 and G-Quadruplex Structures.
Mohammad Lutful Kabir, Sineth G Kodikara, Mohammed Enamul Hoque, Sajad Shiekh, Janan Alfehaid, Soumitra Basu

bioRxiv· November 2024

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Stalling of Transcription by Putative G-quadruplex Sequences and CRISPR-dCas9.
Mohammed Enamul Hoque, Mohammad Lutful Kabir, Sajad Shiekh, Hamza Balci, Soumitra Basu

bioRxiv· March 2024

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NAT8L mRNA oxidation is linked to neurodegeneration in multiple sclerosis.
Prakash Kharel, Naveen Kumar Singhal, Thulasi Mahendran, Nicole West, Brintha Croos, Soumitra Basu

Cell Chem Biol· March 2023

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Decay of Piwi-Interacting RNAs in Human Cells Is Primarily Mediated by 5' to 3' Exoribonucleases.
Sumirtha Balaratnam, Mohammed Enamul Hoque, Nicole West, Soumitra Basu

ACS Chem Biol· July 2022

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Rationally designed DNA therapeutics can modulate human TH expression by controlling specific GQ formation in its promoter.
Nathan Beals, Mohamed M Farhath, Prakash Kharel, Brintha Croos, Thulasi Mahendran, Soumitra Basu

Mol Ther· February 2022

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Reversal of G-Quadruplexes' Role in Translation Control When Present in the Context of an IRES.
Mohammed Enamul Hoque, Thulasi Mahendran, Soumitra Basu

Biomolecules· February 2022

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The BHMT-betaine methylation pathway epigenetically modulates oligodendrocyte maturation.
Sarah Sternbach, Nicole West, Naveen K Singhal, Robert Clements, Soumitra Basu

PLoS One· October 2021

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Encounters between Cas9/dCas9 and G-Quadruplexes: Implications for Transcription Regulation and Cas9-Mediated DNA Cleavage.
Mohammed Enamul Hoque, Golam Mustafa, Soumitra Basu, Hamza Balci

ACS Synth Biol· May 2021

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Mono- and bilayer smectic liquid crystal ordering in dense solutions of "gapped" DNA duplexes.
Prabesh Gyawali, Rony Saha, Gregory P Smith, Miroslaw Salamonczyk, Prakash Kharel, Soumitra Basu

Proc Natl Acad Sci U S A· March 2021

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The role of RNA G-quadruplexes in human diseases and therapeutic strategies.
Prakash Kharel, Sumirtha Balaratnam, Nathan Beals, Soumitra Basu

Wiley Interdiscip Rev RNA· January 2020

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Physicochemical Investigation into Major League Baseballs in the Era of Unprecedented Rise in Home Runs.
Nathan Beals, Liping Zhang, Meng Law, Darryl Hwang, Jay Acharya, Soumitra Basu

ACS Omega· December 2019

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Stable G-quadruplex enabling sequences are selected against by the context-dependent codon bias.
Gayan Mirihana Arachchilage, Madara Hetti Arachchilage, Aparna Venkataraman, Helen Piontkivska, Soumitra Basu

Gene· May 2019

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A secondary structure within a human piRNA modulates its functionality.
Sumirtha Balaratnam, Madara Hettiarachchilage, Nicole West, Helen Piontkivska, Soumitra Basu

Biochimie· February 2019

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Efficient Delivery of Plasmid DNA Using Incorporated Nucleotides for Precise Conjugation of Targeted Nanoparticles.
Nathan Beals, Nithya Kasibhatla, Soumitra Basu

ACS Appl Bio Mater· February 2019

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A force sensor that converts fluorescence signal into force measurement utilizing short looped DNA.
Golam Mustafa, Cho-Ying Chuang, William A Roy, Mohamed M Farhath, Nilisha Pokhrel, Soumitra Basu

Biosens Bioelectron· December 2018

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A piRNA utilizes HILI and HIWI2 mediated pathway to down-regulate ferritin heavy chain 1 mRNA in human somatic cells.
Sumirtha Balaratnam, Nicole West, Soumitra Basu

Nucleic Acids Res· November 2018

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Targeting of G-Quadruplex Harboring Pre-miRNA 92b by LNA Rescues PTEN Expression in NSCL Cancer Cells.
Gayan Mirihana Arachchilage, Prakash Kharel, Joshua Reid, Soumitra Basu

ACS Chem Biol· April 2018

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Intermolecular G-Quadruplex Induces Hyaluronic Acid-DNA Superpolymers Causing Cancer Cell Swelling, Blebbing, and Death.
Nathan Beals, Michael A Model, Matt Worden, Torsten Hegmann, Soumitra Basu

ACS Appl Mater Interfaces· February 2018

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Five-Part Pentameric Nanocomplex Shows Improved Efficacy of Doxorubicin in CD44+ Cancer Cells.
Nathan Beals, Praveena S Thiagarajan, Eric Soehnlen, Arijit Das, Ofer Reizes, Soumitra Basu

ACS Omega· November 2017

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Engineered domain swapping indicates context dependent functional role of RNA G-quadruplexes.
Debmalya Bhattacharyya, Mark J Morris, Prakash Kharel, Gayan Mirihana Arachchilage, Katy M Fedeli, Soumitra Basu

Biochimie· June 2017

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Kinetic studies on the reaction of cob(II)alamin with hypochlorous acid: Evidence for one electron oxidation of the metal center and corrin ring destruction.
Rohan S Dassanayake, Mohamed M Farhath, Jacob T Shelley, Soumitra Basu, Nicola E Brasch

J Inorg Biochem· October 2016

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Metal Cations in G-Quadruplex Folding and Stability.
Debmalya Bhattacharyya, Gayan Mirihana Arachchilage, Soumitra Basu

Front Chem· September 2016

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Evidence of extensive RNA oxidation in normal appearing cortex of multiple sclerosis brain.
Prakash Kharel, Jennifer McDonough, Soumitra Basu

Neurochem Int· January 2016

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G-Quadruplex-Enabling Sequence within the Human Tyrosine Hydroxylase Promoter Differentially Regulates Transcription.
Mohamed M Farhath, Matthew Thompson, Sujay Ray, Abby Sewell, Hamza Balci, Soumitra Basu

Biochemistry· September 2015

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