Publications by authors named "Harold D Kim"

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Visualizing Poloidal Orientation in DNA Minicircles.
Tony Lemos, Harold D Kim

bioRxiv· August 2025

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Visualizing Poloidal Orientation in DNA Minicircles.
Tony Lemos, Harold D Kim

ArXiv· August 2025

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A new twist on PIFE: photoisomerisation-related fluorescence enhancement.
Evelyn Ploetz, Benjamin Ambrose, Anders Barth, Richard Börner, Felix Erichson, Harold D Kim

Methods Appl Fluoresc· October 2023

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A new twist on PIFE: photoisomerisation-related fluorescence enhancement.
Evelyn Ploetz, Benjamin Ambrose, Anders Barth, Richard Börner, Felix Erichson, Harold D Kim

ArXiv· July 2023

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Toward a 3D physical model of diffusive polymer chains.
Andras Karsai, Grace J Cassidy, Aradhya P Rajanala, Lixinhao Yang, Deniz Kerimoglu, Harold D Kim

Front Phys· June 2023

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Weak tension accelerates hybridization and dehybridization of short oligonucleotides.
Derek J Hart, Jiyoun Jeong, James C Gumbart, Harold D Kim

Nucleic Acids Res· April 2023

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FISHing on a Budget.
Gable M Wadsworth, Harold D Kim

Methods Mol Biol· January 2022

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First passage time study of DNA strand displacement.
D W Bo Broadwater, Alexander W Cook, Harold D Kim

Biophys J· June 2021

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Coarse-Grained Simulations of DNA Reveal Angular Dependence of Sticky-End Binding.
Nicholas M Gravina, James C Gumbart, Harold D Kim

J Phys Chem B· April 2021

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FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.
Eitan Lerner, Anders Barth, Jelle Hendrix, Benjamin Ambrose, Victoria Birkedal, Harold D Kim

Elife· March 2021

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Determinants of cyclization-decyclization kinetics of short DNA with sticky ends.
Jiyoun Jeong, Harold D Kim

Nucleic Acids Res· May 2020

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Stability and nuclear localization of yeast telomerase depend on protein components of RNase P/MRP.
P Daniela Garcia, Robert W Leach, Gable M Wadsworth, Krishna Choudhary, Hua Li, Harold D Kim

Nat Commun· May 2020

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Base-Pair Mismatch Can Destabilize Small DNA Loops through Cooperative Kinking.
Jiyoun Jeong, Harold D Kim

Phys Rev Lett· May 2019

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ERASE: a novel surface reconditioning strategy for single-molecule experiments.
D W Bo Broadwater, Roger B Altman, Scott C Blanchard, Harold D Kim

Nucleic Acids Res· February 2019

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Dual-probe RNA FRET-FISH in Yeast.
Gable M Wadsworth, Rasesh Y Parikh, Harold D Kim

Bio Protoc· June 2018

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Single-probe RNA FISH in Yeast.
Gable M Wadsworth, Rasesh Y Parikh, Harold D Kim

Bio Protoc· June 2018

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mRNA detection in budding yeast with single fluorophores.
Gable M Wadsworth, Rasesh Y Parikh, John S Choy, Harold D Kim

Nucleic Acids Res· September 2017

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Single-molecule fluorescence studies on DNA looping.
Jiyoun Jeong, Tung T Le, Harold D Kim

Methods· August 2016

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Transitions of Double-Stranded DNA Between the A- and B-Forms.
James T Waters, Xiang-Jun Lu, Rodrigo Galindo-Murillo, James C Gumbart, Harold D Kim

J Phys Chem B· August 2016

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DNA Scrunching in the Packaging of Viral Genomes.
James T Waters, Harold D Kim, James C Gumbart, Xiang-Jun Lu, Stephen C Harvey

J Phys Chem B· July 2016

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The Effect of Basepair Mismatch on DNA Strand Displacement.
D W Bo Broadwater, Harold D Kim

Biophys J· April 2016

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Force distribution in a semiflexible loop.
James T Waters, Harold D Kim

Phys Rev E· April 2016

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Calculation of a fluctuating entropic force by phase space sampling.
James T Waters, Harold D Kim

Phys Rev E Stat Nonlin Soft Matter Phys· July 2015

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Probing the elastic limit of DNA bending.
Tung T Le, Harold D Kim

Nucleic Acids Res· January 2015

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Studying DNA looping by single-molecule FRET.
Tung T Le, Harold D Kim

J Vis Exp· June 2014

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