Publications by authors named "Xiang-Jun Lu"

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Analyzing Transmission Patterns of Two Dengue Virus Serotypes during the 2023 Outbreak in Mali, West Africa.
Fousseyni Kane, Yacouba Cissoko, John Collins, Dramane Diallo, Bassirou Diarra, Xiang-Jun Lu

Am J Trop Med Hyg· August 2025

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Contributions of Local Structural and Energetic Features of DNA to Large-scale Genomic Organization.
Wilma K Olson, Nicolas Clauvelin, Stefjord Todolli, Xiang-Jun Lu

J Mol Biol· August 2025

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Predicting the DNA binding specificity of transcription factor mutants using family-level biophysically interpretable machine learning.
Shaoxun Liu, Pilar Gomez-Alcala, Christ Leemans, William J Glassford, Lucas A N Melo, Xiang-Jun Lu

Nucleic Acids Res· August 2025

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Molecular characterization of human respiratory syncytial virus in Mexico (season 2023-2024) through whole-genome sequencing.
Evelyn Rivera-Toledo, Fidencio Mejıa-Nepomuceno, Enrique Mendoza-Ramırez, America Vera-Jimenez, Eduardo Becerril-Vargas, Xiang-Jun Lu

Sci Rep· July 2025

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Application of Pan-Viral Metagenomic Sequencing on United States Air Force Academy Wastewater to Uncover Potential Causes of Acute Gastroenteritis.
Michael A Mechikoff, John P Collins, Philip Golder, Cullen M Ingersoll, Riley E McGarry, Xiang-Jun Lu

Mil Med· June 2025

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Predicting the DNA binding specificity of transcription factor mutants using family-level biophysically interpretable machine learning.
Shaoxun Liu, Pilar Gomez-Alcala, Christ Leemans, William J Glassford, Lucas A N Melo, Xiang-Jun Lu

bioRxiv· April 2025

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Correction: Moonga et al. Application of a Sensitive Capture Sequencing Approach to Reservoir Surveillance Detects Novel Viruses in Zambian Wild Rodents. 2024, , 1754.
Lavel C Moonga, Jones Chipinga, John P Collins, Vishal Kapoor, Ngonda Saasa, King S Nalubamba, Tapiwa Lundu, Xiang-Jun Lu

Viruses· April 2025

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Adding Virome Capture Metagenomic Sequencing to Conventional Laboratory Testing Increases Unknown Fever Etiology Determination in Bamako, Mali.
Amadou Koné, Fousseyni Kané, Aaron Neal, Issa Konate, Bintou Coulibaly, Xiang-Jun Lu

Am J Trop Med Hyg· March 2025

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Surveillance and agnostic capture sequencing of samples from individuals with rash-associated illness in Mali indicates regional transmission of measles virus from West and Central Africa.
Fousseyni Kané, John Collins, Amadou Koné, Noumou Y Keita, Issa Cisse, Xiang-Jun Lu

Infect Genet Evol· December 2024

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Application of a Sensitive Capture Sequencing Approach to Reservoir Surveillance Detects Novel Viruses in Zambian Wild Rodents.
Lavel C Moonga, Jones Chipinga, John P Collins, Vishal Kapoor, Ngonda Saasa, King S Nalubamba, Tapiwa Lundu, Xiang-Jun Lu

Viruses· November 2024

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Opportunistic use of chest low-dose computed tomography (LDCT) imaging for low bone mineral density and osteoporosis screening: cutoff thresholds for the attenuation values of the lower thoracic and upper lumbar vertebrae.
Ya-Ling Pan, Yin-Bo Wu, Huo-Gen Wang, Tai-Hen Yu, Dong He, Xiang-Jun Lu

Quant Imaging Med Surg· July 2024

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Structure-based prediction and characterization of photo-crosslinking in native protein-RNA complexes.
Huijuan Feng, Xiang-Jun Lu, Suvrajit Maji, Linxi Liu, Dmytro Ustianenko

Nat Commun· March 2024

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New restraints and validation approaches for nucleic acid structures in PDB-REDO.
Ida de Vries, Tim Kwakman, Xiang Jun Lu, Maarten L Hekkelman, Mandar Deshpande

Acta Crystallogr D Struct Biol· September 2021

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DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL.
Xiang-Jun Lu

Nucleic Acids Res· July 2020

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Toward a Mechanistic Understanding of DNA Methylation Readout by Transcription Factors.
Judith F Kribelbauer, Xiang-Jun Lu, Remo Rohs, Richard S Mann, Harmen J Bussemaker

J Mol Biol· March 2020

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Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures.
Shuxiang Li, Wilma K Olson, Xiang-Jun Lu

Nucleic Acids Res· July 2019

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DNA Conformational Changes Play a Force-Generating Role during Bacteriophage Genome Packaging.
Kim A Sharp, Xiang-Jun Lu, Gino Cingolani, Stephen C Harvey

Biophys J· June 2019

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Effects of Noncanonical Base Pairing on RNA Folding: Structural Context and Spatial Arrangements of G·A Pairs.
Wilma K Olson, Shuxiang Li, Thomas Kaukonen, Andrew V Colasanti, Yurong Xin, Xiang-Jun Lu

Biochemistry· May 2019

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Reduced Gja5 expression in arterial endothelial cells impairs arteriogenesis during acute ischemic cardiovascular disease.
Xiang-Jun Lu, Hai-Tao Wang

Exp Ther Med· November 2017

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Parallels between DNA and collagen - comparing elastic models of the double and triple helix.
Fei Xu, Hongning Zheng, Nicolas Clauvelin, Xiang-Jun Lu, Wilma K Olson

Sci Rep· October 2017

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DSSR-enhanced visualization of nucleic acid structures in Jmol.
Robert M Hanson, Xiang-Jun Lu

Nucleic Acids Res· July 2017

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Transitions of Double-Stranded DNA Between the A- and B-Forms.
James T Waters, Xiang-Jun Lu, Rodrigo Galindo-Murillo, James C Gumbart, Harold D Kim

J Phys Chem B· August 2016

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DNA Scrunching in the Packaging of Viral Genomes.
James T Waters, Harold D Kim, James C Gumbart, Xiang-Jun Lu, Stephen C Harvey

J Phys Chem B· July 2016

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DSSR: an integrated software tool for dissecting the spatial structure of RNA.
Xiang-Jun Lu, Harmen J Bussemaker, Wilma K Olson

Nucleic Acids Res· December 2015

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Harnessing natural sequence variation to dissect posttranscriptional regulatory networks in yeast.
Mina Fazlollahi, Eunjee Lee, Ivor Muroff, Xiang-Jun Lu, Pilar Gomez-Alcala

G3 (Bethesda)· June 2014

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