Publications by authors named "Harun Mustafa"

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Efficient and accurate search in petabase-scale sequence repositories.
Mikhail Karasikov, Harun Mustafa, Daniel Danciu, Oleksandr Kulkov, Marc Zimmermann

Nature· November 2025

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Label-guided seed-chain-extend alignment on annotated De Bruijn graphs.
Harun Mustafa, Mikhail Karasikov, Nika Mansouri Ghiasi, Gunnar Rätsch, André Kahles

Bioinformatics· June 2024

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Aligning distant sequences to graphs using long seed sketches.
Amir Joudaki, Alexandru Meterez, Harun Mustafa, Ragnar Groot Koerkamp, André Kahles

Genome Res· July 2023

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Lossless indexing with counting de Bruijn graphs.
Mikhail Karasikov, Harun Mustafa, Gunnar Rätsch, André Kahles

Genome Res· September 2022

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Biosynthetic potential of the global ocean microbiome.
Lucas Paoli, Hans-Joachim Ruscheweyh, Clarissa C Forneris, Florian Hubrich, Satria Kautsar, Harun Mustafa

Nature· July 2022

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Topology-based sparsification of graph annotations.
Daniel Danciu, Mikhail Karasikov, Harun Mustafa, André Kahles, Gunnar Rätsch

Bioinformatics· July 2021

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Sparse Binary Relation Representations for Genome Graph Annotation.
Mikhail Karasikov, Harun Mustafa, Amir Joudaki, Sara Javadzadeh-No, Gunnar Rätsch

J Comput Biol· April 2020

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Dynamic compression schemes for graph coloring.
Harun Mustafa, Ingo Schilken, Mikhail Karasikov, Carsten Eickhoff, Gunnar Rätsch

Bioinformatics· February 2019

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Sequence-based prediction of permissive stretches for internal protein tagging and knockdown.
Sabine Oesterle, Tania Michelle Roberts, Lukas Andreas Widmer, Harun Mustafa, Sven Panke

BMC Biol· October 2017

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Assembly and characterization of novel inserts detected from next-generation sequencing data.
Harun Mustafa, Matei David, Michael Brudno

Mob Genet Elements· October 2014

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Detecting Alu insertions from high-throughput sequencing data.
Matei David, Harun Mustafa, Michael Brudno

Nucleic Acids Res· September 2013

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