Publications by authors named "Hashim Alhashimi"

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Assessing the contribution of rare DNA states to cancer mutational signatures using sequence-specific conformational fingerprinting.
Or Szekely, Yeongjoon Lee, Atul K Rangadurai, Serafima Guseva, Joshua Cooksey

Res Sq· November 2025

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Revealing hidden protonated conformational states in RNA dynamic ensembles.
Ainan Geng, Rohit Roy, Laura Ganser, Linshu Li, Hashim M Al-Hashimi

Nucleic Acids Res· November 2025

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Fluorescent Sensing of SO by MFM-300(M) Metal-Organic Frameworks: Influence of Semi-Open Metal Centres.
Valeria B López-Cervantes, Hashim Alhashimi, Christian A Celaya, M Solórzano, Marco L Martínez

Small· October 2025

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Insight into the Conformational Ensembles Formed by U-U and T-T Mismatches in RNA and DNA Duplexes From a Structure-based Survey, NMR, and Molecular Dynamics Simulations.
Ainan Geng, Rohit Roy, Stephanie Gu, Serafima Guseva, Supriya Pratihar

J Mol Biol· September 2025

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Probing rare and short-lived conformational states in nucleic acids using off-resonance carbonyl and guanidino carbon R relaxation dispersion.
Supriya Pratihar, Yeongjoon Lee, Ainan Geng, Shibani Bhattacharya, Hashim M Al-Hashimi

J Magn Reson· August 2025

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An A-T Hoogsteen Base Pair in a Naked DNA Hairpin Motif: A Protein-Recognized Conformation.
Serafima Guseva, Or Szekely, Ainan Geng, Kai Smith, Supriya Pratihar

Angew Chem Int Ed Engl· June 2025

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Kinetic Dissection of Proton-Coupled Conformational Transitions in Nucleic Acids by Integrating pH-Dependent NMR and Chemical Modifications.
Yeongjoon Lee, Rohit Roy, Stephanie Gu, Subin B Shetty, Atul K Rangadurai

J Am Chem Soc· June 2025

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Impact of 3D Printing and CAD/CAM Technology on Orthodontic Treatment Outcomes: A Systematic Review and Meta-Analysis.
Navin Anand Ingle, Hashim Al-Hashimi, Arwa Tawfiq Alhammad, Hadeel Abdullah Aldajani, Nisrin Fouad Alabsi

J Pharm Bioallied Sci· May 2025

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Quantitative and Systematic NMR Measurements of Sequence-Dependent A-T Hoogsteen Dynamics in the DNA Double Helix.
Akanksha Manghrani, Atul Kaushik Rangadurai, Or Szekely, Bei Liu, Serafima Guseva

Biochemistry· March 2025

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Conformational penalties: New insights into nucleic acid recognition.
Ainan Geng, Rohit Roy, Hashim M Al-Hashimi

Curr Opin Struct Biol· December 2024

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An A-T Hoogsteen base pair in a naked DNA hairpin motif: A Protein-Recognized Conformation.
Serafima Guseva, Or Szekely, Ainan Geng, Kai Smith, Supriya Pratihar

bioRxiv· December 2024

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Exploring the energetic and conformational properties of the sequence space connecting naturally occurring RNA tetraloop receptor motifs.
John H Shin, Lena M Cuevas, Rohit Roy, Steve L Bonilla, Hashim Al-Hashimi

RNA· November 2024

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Insights into the A-C Mismatch Conformational Ensemble in Duplex DNA and its Role in Genetic Processes through a Structure-based Review.
Yeongjoon Lee, Stephanie Gu, Hashim M Al-Hashimi

J Mol Biol· September 2024

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RNA dynamics from experimental and computational approaches.
Giovanni Bussi, Massimiliano Bonomi, Paraskevi Gkeka, Michael Sattler, Hashim M Al-Hashimi

Structure· September 2024

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AlphaFold3 takes a step toward decoding molecular behavior and biological computation.
Rohit Roy, Hashim M Al-Hashimi

Nat Struct Mol Biol· July 2024

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Direct Measurement of 8OG Syn-Anti Flips in Mutagenic 8OG·A and Long-Range Damage-Dependent Hoogsteen Breathing Dynamics Using H CEST NMR.
Stephanie Gu, Hashim M Al-Hashimi

J Phys Chem B· May 2024

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Cost of Healthcare Services in Geriatric Neuro-oncology: A descriptive Analysis.
Zainab Saif Al-Siyabi, Omar Al-Mahrouqi, Osama Al-Senani, Suha Al-Amri, Zainab Al-Ajmi

Gulf J Oncolog· May 2024

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Quantitative and systematic NMR measurements of sequence-dependent A-T Hoogsteen dynamics uncovers unique conformational specificity in the DNA double helix.
Akanksha Manghrani, Atul Kaushik Rangadurai, Or Szekely, Bei Liu, Serafima Guseva

bioRxiv· May 2024

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NMR measurements of transient low-populated tautomeric and anionic Watson-Crick-like G·T/U in RNA:DNA hybrids: implications for the fidelity of transcription and CRISPR/Cas9 gene editing.
Or Szekely, Atul Kaushik Rangadurai, Stephanie Gu, Akanksha Manghrani, Serafima Guseva

Nucleic Acids Res· March 2024

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Direct Measurement of 8OG Flips in Mutagenic 8OG•A and Long-Range Damage-Dependent Hoogsteen Breathing Dynamics Using H CEST NMR.
Stephanie Gu, Hashim M Al-Hashimi

bioRxiv· January 2024

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Hydrogen bonding in duplex DNA probed by DNP enhanced solid-state NMR N-H bond length measurements.
Lakshmi Bhai, Justin K Thomas, Daniel W Conroy, Yu Xu, Hashim M Al-Hashimi

Front Mol Biosci· December 2023

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An RNA excited conformational state at atomic resolution.
Ainan Geng, Laura Ganser, Rohit Roy, Honglue Shi, Supriya Pratihar

Nat Commun· December 2023

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Kinetic Resolution of the Atomic 3D Structures Formed by Ground and Excited Conformational States in an RNA Dynamic Ensemble.
Rohit Roy, Ainan Geng, Honglue Shi, Dawn K Merriman, Elizabeth A Dethoff

J Am Chem Soc· October 2023

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NMR measurements of transient low-populated tautomeric and anionic Watson-Crick-like G·T/U in RNA:DNA hybrids: Implications for the fidelity of transcription and CRISPR/Cas9 gene editing.
Or Szekely, Atul Kaushik Rangadurai, Stephanie Gu, Akanksha Manghrani, Serafima Guseva

bioRxiv· August 2023

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Turing, von Neumann, and the computational architecture of biological machines.
Hashim M Al-Hashimi

Proc Natl Acad Sci U S A· June 2023

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