Publications by authors named "Hector Bravo"

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SPEX: A modular end-to-end platform for high-plex tissue spatial omics analysis.
Xiao Li, Ximo Pechuan-Jorge, Tyler Risom, Conrad Foo, Alexander Prilipko, Hector Corrada Bravo

Gigascience· January 2025

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Capturing discrete latent structures: choose LDs over PCs.
Theresa A Alexander, Rafael A Irizarry, Héctor Corrada Bravo

Biostatistics· December 2022

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Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse.
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian, Hector Corrada Bravo

Nature· April 2022

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The Educational Quality of Laparoscopic Right Hemicolectomy Videos on YouTube.
Paulina Moctezuma-Velázquez, Oscar Santes, Juan C Sainz-Hernández, Franciso E Álvarez-Bautista, Héctor E Bravo

Surg Innov· February 2022

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Multivariable association discovery in population-scale meta-omics studies.
Himel Mallick, Ali Rahnavard, Lauren J McIver, Siyuan Ma, Yancong Zhang, Hector Corrada Bravo

PLoS Comput Biol· November 2021

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Reporting guidelines for human microbiome research: the STORMS checklist.
Chloe Mirzayi, Audrey Renson, , , Fatima Zohra, Hector Corrada Bravo

Nat Med· November 2021

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Comparative cellular analysis of motor cortex in human, marmoset and mouse.
Trygve E Bakken, Nikolas L Jorstad, Qiwen Hu, Blue B Lake, Wei Tian, Hector Corrada Bravo

Nature· October 2021

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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.
Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S Adkins, Héctor Corrada Bravo

Nature· October 2021

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gEAR: Gene Expression Analysis Resource portal for community-driven, multi-omic data exploration.
Joshua Orvis, Brian Gottfried, Jayaram Kancherla, Ricky S Adkins, Yang Song, Hector Corrada Bravo

Nat Methods· August 2021

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Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
Hirak Sarkar, Avi Srivastava, Héctor Corrada Bravo, Michael I Love, Rob Patro

Bioinformatics· July 2020

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: Simulating longitudinal differential abundance for microbiome data.
Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson

F1000Res· June 2020

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A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.
Nathan D Olson, M Senthil Kumar, Shan Li, Domenick J Braccia, Stephanie Hao, Hector Corrada Bravo

Microbiome· March 2020

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Epiviz Web Components: reusable and extensible component library to visualize functional genomic datasets.
Jayaram Kancherla, Alexander Zhang, Brian Gottfried, Hector Corrada Bravo

F1000Res· September 2019

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Smooth quantile normalization.
Stephanie C Hicks, Kwame Okrah, Joseph N Paulson, John Quackenbush, Rafael A Irizarry, Héctor Corrada Bravo

Biostatistics· April 2018

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BatchQC: interactive software for evaluating sample and batch effects in genomic data.
Solaiappan Manimaran, Heather Marie Selby, Kwame Okrah, Claire Ruberman, Jeffrey T Leek, Hector Corrada Bravo

Bioinformatics· December 2016

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Heterogeneity of transcription factor binding specificity models within and across cell lines.
Mahfuza Sharmin, Héctor Corrada Bravo, Sridhar Hannenhalli

Genome Res· August 2016

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Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment.
Mihai Pop, Joseph N Paulson, Subhra Chakraborty, Irina Astrovskaya, Brianna R Lindsay, Héctor Corrada Bravo

BMC Genomics· June 2016

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Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.
Maria Cecilia Fernandes, Laura A L Dillon, Ashton Trey Belew, Hector Corrada Bravo, David M Mosser

mBio· May 2016

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Distinct genomic and epigenomic features demarcate hypomethylated blocks in colon cancer.
Mahfuza Sharmin, Héctor Corrada Bravo, Sridhar Hannenhalli

BMC Cancer· February 2016

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Gene Expression Signatures Based on Variability can Robustly Predict Tumor Progression and Prognosis.
Wikum Dinalankara, Héctor Corrada Bravo

Cancer Inform· June 2015

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Orchestrating high-throughput genomic analysis with Bioconductor.
Wolfgang Huber, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson, Hector Corrada Bravo

Nat Methods· February 2015

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Epiviz: interactive visual analytics for functional genomics data.
Florin Chelaru, Llewellyn Smith, Naomi Goldstein, Héctor Corrada Bravo

Nat Methods· September 2014

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Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors.
Winston Timp, Hector Corrada Bravo, Oliver G McDonald, Michael Goggins, Chris Umbricht

Genome Med· September 2014

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Reply to: "a fair comparison".
Joseph N Paulson, Héctor Corrada Bravo, Mihai Pop

Nat Methods· April 2014

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Differential abundance analysis for microbial marker-gene surveys.
Joseph N Paulson, O Colin Stine, Héctor Corrada Bravo, Mihai Pop

Nat Methods· December 2013

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