Publications by authors named "Marc Carlson"

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Cross-species biomarkers of cerebellar injury in acute sepsis: integrated metabolomics of mouse cerebellum and plasma identify conserved human plasma biomarkers and therapeutic modulation by human MSC-sEVs.
Dylan W Crawford, Maria Triantafyllou, Nora Wolff, Marc Carlson, Chad Byrd

bioRxiv· September 2025

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Exposure to Human Immunodeficiency Virus Is Associated With Altered Composition of Maternal Microchimeric T Cells in Infants.
Blair Armistead, M Quinn Peters, John Houck, Marc Carlson, Christina Balle

J Infect Dis· February 2025

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Exposure to HIV alters the composition of maternal microchimeric T cells in infants.
Blair Armistead, M Quinn Peters, John Houck, Marc Carlson, Christina Balle

bioRxiv· March 2024

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A non-invasive method to sample immune cells in the lower female genital tract using menstrual discs.
M Quinn Peters, Eva Domenjo-Vila, Marc Carlson, Blair Armistead, Paul T Edlefsen

bioRxiv· February 2024

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A Noninvasive Method to Sample Immune Cells in the Lower Female Genital Tract Using Menstrual Discs.
M Quinn Peters, Eva Domenjo-Vila, Marc Carlson, Blair Armistead, Paul T Edlefsen

Immunohorizons· February 2024

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Context-specific synthetic T cell promoters from assembled transcriptional elements.
Jacob Appelbaum, Jia Wei, Rithun Mukherjee, Taylor Ishida, James Rosser, Marc Carlson

Res Sq· October 2023

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Spike-specific T cells are enriched in breastmilk following SARS-CoV-2 mRNA vaccination.
Blair Armistead, Yonghou Jiang, Marc Carlson, Emily S Ford, Saumya Jani

Mucosal Immunol· February 2023

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Spike-specific T cells are enriched in breastmilk following SARS-CoV-2 mRNA vaccination.
Blair Armistead, Yonghou Jiang, Marc Carlson, Emily S Ford, Saumya Jani

medRxiv· September 2022

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Genomic Annotation Resources in R/Bioconductor.
Marc R J Carlson, Hervé Pagès, Sonali Arora, Valerie Obenchain, Martin Morgan

Methods Mol Biol· December 2016

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Orchestrating high-throughput genomic analysis with Bioconductor.
Wolfgang Huber, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson

Nat Methods· February 2015

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Software for computing and annotating genomic ranges.
Michael Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson

PLoS Comput Biol· February 2014

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New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing.
Andreas Keller, Angela Graefen, Markus Ball, Mark Matzas, Valesca Boisguerin, Marc R J Carlson

Nat Commun· February 2012

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Osteogenic oxysterol, 20(S)-hydroxycholesterol, induces notch target gene expression in bone marrow stromal cells.
Woo-Kyun Kim, Vicente Meliton, Sotirios Tetradis, Gerry Weinmaster, Theodore J Hahn, Marc Carlson

J Bone Miner Res· April 2010

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A central role for induced regulatory T cells in tolerance induction in experimental colitis.
Dipica Haribhai, Wen Lin, Brandon Edwards, Jennifer Ziegelbauer, Nita H Salzman, Marc R Carlson

J Immunol· March 2009

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Genetically defined EWS/FLI1 model system suggests mesenchymal origin of Ewing's family tumors.
Gary Potikyan, Kelly A France, Marc R J Carlson, Jun Dong, Stanley F Nelson

Lab Invest· December 2008

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Relationship between gene expression and enhancement in glioblastoma multiforme: exploratory DNA microarray analysis.
Whitney B Pope, Jenny H Chen, Jun Dong, Marc R J Carlson, Alla Perlina

Radiology· October 2008

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Celsius: a community resource for Affymetrix microarray data.
Allen Day, Marc R J Carlson, Jun Dong, Brian D O'Connor, Stanley F Nelson

Genome Biol· February 2008

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Relationship between survival and edema in malignant gliomas: role of vascular endothelial growth factor and neuronal pentraxin 2.
Marc R J Carlson, Whitney B Pope, Steve Horvath, Jerome G Braunstein, Phioanh Nghiemphu

Clin Cancer Res· May 2007

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Regulatory T cell development in the absence of functional Foxp3.
Wen Lin, Dipica Haribhai, Lance M Relland, Nga Truong, Marc R Carlson

Nat Immunol· April 2007

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Oxysterols are novel activators of the hedgehog signaling pathway in pluripotent mesenchymal cells.
Jennifer R Dwyer, Navdar Sever, Marc Carlson, Stanley F Nelson, Philip A Beachy

J Biol Chem· March 2007

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Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks.
Marc R J Carlson, Bin Zhang, Zixing Fang, Paul S Mischel, Steve Horvath

BMC Genomics· March 2006

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Proteinase and growth factor alterations revealed by gene microarray analysis of human diabetic corneas.
Mehrnoosh Saghizadeh, Andrei A Kramerov, Jian Tajbakhsh, Annette M Aoki, Charles Wang, Marc R J Carlson

Invest Ophthalmol Vis Sci· October 2005

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