Publications by authors named "Henry Pratt"

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An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation.
Jill E Moore, Henry E Pratt, Kaili Fan, Nishigandha Phalke, Jonathan Fisher

bioRxiv· December 2024

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Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements.
Henry E Pratt, Gregory Andrews, Nicole Shedd, Nishigandha Phalke, Tongxin Li

Sci Adv· May 2024

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Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain.
Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Henry Pratt

Science· May 2024

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Single-cell genomics and regulatory networks for 388 human brains.
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Henry Pratt

Science· May 2024

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Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements.
Morgan E Wirthlin, Tobias A Schmid, Julie E Elie, Xiaomeng Zhang, Amanda Kowalczyk, Henry E Pratt

Science· March 2024

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Single-cell genomics and regulatory networks for 388 human brains.
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Henry Pratt

bioRxiv· March 2024

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Beyond genome-wide association studies: Investigating the role of noncoding regulatory elements in primary sclerosing cholangitis.
Henry E Pratt, Tong Wu, Shaimae Elhajjajy, Jeffrey Zhou, Kate Fitzgerald, Daniel S Pratt

Hepatol Commun· October 2023

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Mammalian evolution of human cis-regulatory elements and transcription factor binding sites.
Gregory Andrews, Kaili Fan, Henry E Pratt, Nishigandha Phalke,

Science· April 2023

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Cross-ancestry, cell-type-informed atlas of gene, isoform, and splicing regulation in the developing human brain.
Cindy Wen, Michael Margolis, Rujia Dai, Pan Zhang, Pawel F Przytycki, Henry Pratt

medRxiv· March 2023

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The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models.
Joel Rozowsky, Jiahao Gao, Beatrice Borsari, Yucheng T Yang, Timur Galeev, Henry E Pratt

Cell· March 2023

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Building integrative functional maps of gene regulation.
Jinrui Xu, Henry E Pratt, Jill E Moore, Mark B Gerstein, Zhiping Weng

Hum Mol Genet· October 2022

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Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Nature· May 2022

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MafB, WDR77, and ß-catenin interact with each other and have similar genome association profiles.
Lizhi He, Mingshi Gao, Henry Pratt, Zhiping Weng, Kevin Struhl

PLoS One· May 2022

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Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types.
Jill E Moore, Xiao-Ou Zhang, Shaimae I Elhajjajy, Kaili Fan, Henry E Pratt

Genome Res· February 2022

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Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites.
Henry E Pratt, Gregory R Andrews, Nishigandha Phalke, Jack D Huey, Michael J Purcaro

Nucleic Acids Res· January 2022

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Genome-wide detection and analysis of CRISPR-Cas off-targets.
Tomás C Rodríguez, Sina Dadafarin, Henry E Pratt, PengPeng Liu, Nadia Amrani

Prog Mol Biol Transl Sci· November 2021

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Investigating the Potential Roles of SINEs in the Human Genome.
Xiao-Ou Zhang, Henry Pratt, Zhiping Weng

Annu Rev Genomics Hum Genet· August 2021

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YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation.
Lizhi He, Henry Pratt, Mingshi Gao, Fengxiang Wei, Zhiping Weng

Elife· August 2021

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YAP1 Withdrawal in Hepatoblastoma Drives Therapeutic Differentiation of Tumor Cells to Functional Hepatocyte-Like Cells.
Jordan L Smith, Tomás C Rodríguez, Haiwei Mou, Suet-Yan Kwan, Henry Pratt

Hepatology· March 2021

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Annotation of chromatin states in 66 complete mouse epigenomes during development.
Arjan van der Velde, Kaili Fan, Junko Tsuji, Jill E Moore, Michael J Purcaro, Henry E Pratt

Commun Biol· February 2021

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Expanded encyclopaedias of DNA elements in the human and mouse genomes.

Nature· July 2020

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LogoJS: a Javascript package for creating sequence logos and embedding them in web applications.
Henry Pratt, Zhiping Weng

Bioinformatics· June 2020

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A curated benchmark of enhancer-gene interactions for evaluating enhancer-target gene prediction methods.
Jill E Moore, Henry E Pratt, Michael J Purcaro, Zhiping Weng

Genome Biol· January 2020

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Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers.
Shaliu Fu, Qin Wang, Jill E Moore, Michael J Purcaro, Henry E Pratt

Nucleic Acids Res· November 2018

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HELZ2 Is an IFN Effector Mediating Suppression of Dengue Virus.
Dahlene N Fusco, Henry Pratt, Stephen Kandilas, Scarlett Se Yun Cheon, Wenyu Lin

Front Microbiol· February 2017

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