Publications by authors named "Howook Hwang"

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Targeting Monoallelic / Mutations in Germinal Center-Derived B-Cell Lymphoma with a First-in-Class Histone Acetyltransferase Activator.
Yuxuan Liu, Ted B Piorczynski, Brian Estrella, Edd C Ricker, Manuel Pazos, Howook Hwang

bioRxiv· March 2025

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Enabling structure-based drug discovery utilizing predicted models.
Edward B Miller, Howook Hwang, Mee Shelley, Andrew Placzek, João P G L M Rodrigues

Cell· February 2024

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PrePCI: A structure- and chemical similarity-informed database of predicted protein compound interactions.
Stephen J Trudeau, Howook Hwang, Deepika Mathur, Kamrun Begum, Donald Petrey

Protein Sci· April 2023

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Structure-based prediction of ligand-protein interactions on a genome-wide scale.
Howook Hwang, Fabian Dey, Donald Petrey, Barry Honig

Proc Natl Acad Sci U S A· December 2017

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A hybrid method for protein-protein interface prediction.
Howook Hwang, Donald Petrey, Barry Honig

Protein Sci· January 2016

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Template-based prediction of protein function.
Donald Petrey, T Scott Chen, Lei Deng, Jose Ignacio Garzon, Howook Hwang

Curr Opin Struct Biol· June 2015

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ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.
Brian G Pierce, Kevin Wiehe, Howook Hwang, Bong-Hyun Kim, Thom Vreven

Bioinformatics· June 2014

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Blind prediction of interfacial water positions in CAPRI.
Marc F Lensink, Iain H Moal, Paul A Bates, Panagiotis L Kastritis, Adrien S J Melquiond, Howook Hwang

Proteins· April 2014

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Evaluating template-based and template-free protein-protein complex structure prediction.
Thom Vreven, Howook Hwang, Brian G Pierce, Zhiping Weng

Brief Bioinform· March 2014

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Binding interface prediction by combining protein-protein docking results.
Howook Hwang, Thom Vreven, Zhiping Weng

Proteins· January 2014

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Performance of ZDOCK in CAPRI rounds 20-26.
Thom Vreven, Brian G Pierce, Howook Hwang, Zhiping Weng

Proteins· December 2013

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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.
Rocco Moretti, Sarel J Fleishman, Rudi Agius, Mieczyslaw Torchala, Paul A Bates, Howook Hwang

Proteins· November 2013

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Exploring angular distance in protein-protein docking algorithms.
Thom Vreven, Howook Hwang, Zhiping Weng

PLoS One· September 2013

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Prediction of protein-protein binding free energies.
Thom Vreven, Howook Hwang, Brian G Pierce, Zhiping Weng

Protein Sci· March 2012

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Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Sarel J Fleishman, Timothy A Whitehead, Eva-Maria Strauch, Jacob E Corn, Sanbo Qin, Howook Hwang

J Mol Biol· November 2011

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Integrating atom-based and residue-based scoring functions for protein-protein docking.
Thom Vreven, Howook Hwang, Zhiping Weng

Protein Sci· September 2011

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A machine learning approach for the prediction of protein surface loop flexibility.
Howook Hwang, Thom Vreven, Troy W Whitfield, Kevin Wiehe, Zhiping Weng

Proteins· August 2011

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A structure-based benchmark for protein-protein binding affinity.
Panagiotis L Kastritis, Iain H Moal, Howook Hwang, Zhiping Weng, Paul A Bates

Protein Sci· March 2011

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Protein-protein docking benchmark version 4.0.
Howook Hwang, Thom Vreven, Joël Janin, Zhiping Weng

Proteins· November 2010

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Performance of ZDOCK and ZRANK in CAPRI rounds 13-19.
Howook Hwang, Thom Vreven, Brian G Pierce, Jui-Hung Hung, Zhiping Weng

Proteins· November 2010

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Protein-protein docking benchmark version 3.0.
Howook Hwang, Brian Pierce, Julian Mintseris, Joël Janin, Zhiping Weng

Proteins· November 2008

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The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
Kevin Wiehe, Brian Pierce, Wei Wei Tong, Howook Hwang, Julian Mintseris

Proteins· December 2007

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