Publications by authors named "Hsin-Nan Lin"

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Nuclear paxillin functions as a molecular switch for alternative splicing in neurons during a critical period of brain development.
Chien-Hsin Chu, Guan-Zhu Pan, Ching-Yen Tsai, Chen-Hsin Albert Yu, Hsin-Nan Lin, Chien-Ling Lin, Pei-Lin Cheng

EMBO J· November 2025

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Hypoxia-induced genome-wide DNA demethylation by DNMT3A and EMT of cancer cells.
Biswanath Chatterjee, Pritha Majumder, Chun-Chang Chen, Jing-Ping Wang, Po-Hsuan Su, Hsin-Nan Lin

Cell Mol Biol Lett· August 2025

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Comprehensive analysis of repetitive extragenic palindrome sequences identified in bacteria and archaea using a new web-based tool, RepRanger.
Oleg N Murashko, Connor Morgan-Lang, Chen-Hsin Albert Yu, Hsin-Nan Lin, Anna Chao Kaberdina, Sue Lin-Chao

mSphere· July 2025

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DNA cytosine methyltransferases differentially regulate genome-wide hypermutation and interhomolog recombination in Trichoderma reesei meiosis.
Lavernchy Jovanska, I-Chen Lin, Jhong-Syuan Yao, Chia-Ling Chen, Hou-Cheng Liu, Hsin-Nan Lin

Nucleic Acids Res· September 2024

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SpliceAPP: an interactive web server to predict splicing errors arising from human mutations.
Ang-Chu Huang, Jia-Ying Su, Yu-Jen Hung, Hung-Lun Chiang, Yi-Ting Chen, Hsin-Nan Lin, Chien-Ling Lin

BMC Genomics· June 2024

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Mechanism and modeling of human disease-associated near-exon intronic variants that perturb RNA splicing.
Hung-Lun Chiang, Yi-Ting Chen, Jia-Ying Su, Hsin-Nan Lin, Chen-Hsin Albert Yu, Yun-Lin Wang, Chien-Ling Lin

Nat Struct Mol Biol· November 2022

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GSAlign: an efficient sequence alignment tool for intra-species genomes.
Hsin-Nan Lin, Wen-Lian Hsu

BMC Genomics· February 2020

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N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding.
Thejkiran Pitti, Ching-Tai Chen, Hsin-Nan Lin, Wai-Kok Choong, Wen-Lian Hsu

Sci Rep· November 2019

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DART: a fast and accurate RNA-seq mapper with a partitioning strategy.
Hsin-Nan Lin, Wen-Lian Hsu

Bioinformatics· January 2018

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Kart: a divide-and-conquer algorithm for NGS read alignment.
Hsin-Nan Lin, Wen-Lian Hsu

Bioinformatics· August 2017

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MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification.
T Mamie Lih, Wai-Kok Choong, Chen-Chun Chen, Cheng-Wei Cheng, Hsin-Nan Lin

Nucleic Acids Res· July 2016

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Human leukocyte antigen typing using a knowledge base coupled with a high-throughput oligonucleotide probe array analysis.
Guang Lan Zhang, Derin B Keskin, Hsin-Nan Lin, Hong Huang Lin, David S DeLuca

Front Immunol· December 2014

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Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
Hsin-Nan Lin, Cédric Notredame, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu

PLoS One· July 2012

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The interactions between religion, religiosity, religious delusion/hallucination, and treatment-seeking behavior among schizophrenic patients in Taiwan.
Charles Lung-Cheng Huang, Chi-Yung Shang, Ming-Shien Shieh, Hsin-Nan Lin, Jin Chung-Jen Su

Psychiatry Res· May 2011

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Improving protein secondary structure prediction based on short subsequences with local structure similarity.
Hsin-Nan Lin, Ting-Yi Sung, Shinn-Ying Ho, Wen-Lian Hsu

BMC Genomics· December 2010

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Efficacy of valproate versus lithium in mania or mixed mania: a randomized, open 12-week trial.
Charles L Bowden, Sergey Mosolov, Luchezar Hranov, Eric Chen, Hussain Habil, Hsin-Nan Lin

Int Clin Psychopharmacol· March 2010

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Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.
Hsin-Nan Lin, Ching-Tai Chen, Ting-Yi Sung, Shinn-Ying Ho, Wen-Lian Hsu

BMC Bioinformatics· December 2009

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HYPLOSP: a knowledge-based approach to protein local structure prediction.
Ching-Tai Chen, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian Hsu

J Bioinform Comput Biol· December 2006

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A new similarity measure among protein sequences.
Kuen-Pin Wu, Hsin-Nan Lin, Ting-Yi Sung, Wen-Lian Hsu

Proc IEEE Comput Soc Bioinform Conf· August 2006

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HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.
Hsin-Nan Lin, Jia-Ming Chang, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu

Bioinformatics· August 2005

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GANA--a genetic algorithm for NMR backbone resonance assignment.
Hsin-Nan Lin, Kun-Pin Wu, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu

Nucleic Acids Res· August 2005

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HYPROSP: a hybrid protein secondary structure prediction algorithm--a knowledge-based approach.
Kuen-Pin Wu, Hsin-Nan Lin, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu

Nucleic Acids Res· October 2004

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Amisulpride versus risperidone in the treatment of schizophrenic patients: a double-blind pilot study in Taiwan.
Tzung J Hwang, Shin-Min Lee, Hsiao-Ju Sun, Hsin-Nan Lin, Shih-Jen Tsai

J Formos Med Assoc· January 2003

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Hypokalemia with venlafaxine.
Chi-Yung Shang, Wei-Tsuen Soong, Hsin-Nan Lin

J Clin Psychiatry· November 2002

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Detecting drug-drug interactions in medication profiles of psychiatric inpatients: a two-stage approach.
Yunn-Fang Ho, Shiou-Huei Huang, Hsin-Nan Lin

J Formos Med Assoc· April 2002

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