Publications by authors named "Jack R Collins"

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Rare disease variant curation from literature: assessing gaps with creatine transport deficiency in focus.
Erica L Lyons, Daniel Watson, Mohammad S Alodadi, Sharie J Haugabook, Gregory J Tawa, Jack R Collins

BMC Genomics· August 2023

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Immuno-transcriptomic profiling of extracranial pediatric solid malignancies.
Andrew S Brohl, Sivasish Sindiri, Jun S Wei, David Milewski, Hsien-Chao Chou, Jack R Collins

Cell Rep· November 2021

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AVIA 3.0: interactive portal for genomic variant and sample level analysis.
Hue V Reardon, Anney Che, Brian T Luke, Sarangan Ravichandran, Jack R Collins

Bioinformatics· August 2021

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AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes.
Hue Vuong, Anney Che, Sarangan Ravichandran, Brian T Luke, Jack R Collins

Bioinformatics· August 2015

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The somatic autosomal mutation matrix in cancer genomes.
Nuri A Temiz, Duncan E Donohue, Albino Bacolla, Karen M Vasquez, David N Cooper, Jack R Collins

Hum Genet· August 2015

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Erratum to: The somatic autosomal mutation matrix in cancer genomes.
Nuri A Temiz, Duncan E Donohue, Albino Bacolla, Karen M Vasquez, David N Cooper, Jack R Collins

Hum Genet· August 2015

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Can structural features of kinase receptors provide clues on selectivity and inhibition? A molecular modeling study.
Sarangan Ravichandran, Brian T Luke, Jack R Collins

J Mol Graph Model· April 2015

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Guanine holes are prominent targets for mutation in cancer and inherited disease.
Albino Bacolla, Nuri A Temiz, Ming Yi, Joseph Ivanic, Regina Z Cer, Jack R Collins

PLoS Genet· March 2014

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Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.
Regina Z Cer, Duncan E Donohue, Uma S Mudunuri, Nuri A Temiz, Michael A Loss, Jack R Collins

Nucleic Acids Res· January 2013

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A molecular model of the enantioselective liquid chromatographic separation of (R,S)-ifosfamide and its N-dechloroethylated metabolites on a teicoplanin aglycon chiral stationary phase.
Sarangan Ravichandran, Jack R Collins, Nagendra Singh, Irving W Wainer

J Chromatogr A· December 2012

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The role of methylation in the intrinsic dynamics of B- and Z-DNA.
Nuri A Temiz, Duncan E Donohue, Albino Bacolla, Brian T Luke, Jack R Collins

PLoS One· November 2012

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Non-B DNA-forming sequences and WRN deficiency independently increase the frequency of base substitution in human cells.
Albino Bacolla, Guliang Wang, Aklank Jain, Nadia A Chuzhanova, Regina Z Cer, Jack R Collins

J Biol Chem· March 2011

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Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes.
Regina Z Cer, Kevin H Bruce, Uma S Mudunuri, Ming Yi, Natalia Volfovsky, Jack R Collins

Nucleic Acids Res· January 2011

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Structural conservation of interferon gamma among vertebrates.
Ram Savan, Sarangan Ravichandran, Jack R Collins, Masahiro Sakai, Howard A Young

Cytokine Growth Factor Rev· April 2009

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Examining the significance of fingerprint-based classifiers.
Brian T Luke, Jack R Collins

BMC Bioinformatics· December 2008

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Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties.
Albino Bacolla, Jacquelynn E Larson, Jack R Collins, Jian Li, Aleksandar Milosavljevic

Genome Res· October 2008

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The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.
Da Wei Huang, Brad T Sherman, Qina Tan, Jack R Collins, W Gregory Alvord

Genome Biol· May 2008

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Interaction of noncompetitive inhibitors with the alpha3beta2 nicotinic acetylcholine receptor investigated by affinity chromatography and molecular docking.
Krzysztof Jozwiak, Sarangan Ravichandran, Jack R Collins, Ruin Moaddel, Irving W Wainer

J Med Chem· November 2007

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Proteomic analysis identifies oxidative stress induction by adaphostin.
Luke H Stockwin, Maja A Bumke, Sherry X Yu, Simon P Webb, Jack R Collins

Clin Cancer Res· June 2007

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Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region.
Albino Bacolla, Jack R Collins, Bert Gold, Nadia Chuzhanova, Ming Yi

Nucleic Acids Res· May 2006

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Qualitative assessment of IC50 values of inhibitors of the neuronal nicotinic acetylcholine receptor using a single chromatographic experiment and multivariate cluster analysis.
Krzysztof Jozwiak, Ruin Moaddel, Rika Yamaguchi, Sarangan Ravichandran, Jack R Collins

J Chromatogr B Analyt Technol Biomed Life Sci· May 2005

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Chemistry of the diazeniumdiolates: Z right harpoon over left harpoon E isomerism.
Yan-Ni Wang, D Scott Bohle, Challice L Bonifant, Gwendolyn N Chmurny, Jack R Collins

J Am Chem Soc· April 2005

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Interaction of noncompetitive inhibitors with an immobilized alpha3beta4 nicotinic acetylcholine receptor investigated by affinity chromatography, quantitative-structure activity relationship analysis, and molecular docking.
Krzysztof Jozwiak, Sarangan Ravichandran, Jack R Collins, Irving W Wainer

J Med Chem· July 2004

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Theoretical studies on the hydrolysis of mono-phosphate and tri-phosphate in gas phase and aqueous solution.
Yan-Ni Wang, Igor A Topol, Jack R Collins, Stanley K Burt

J Am Chem Soc· October 2003

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An exhaustive DNA micro-satellite map of the human genome using high performance computing.
Jack R Collins, Robert M Stephens, Bert Gold, Bill Long, Michael Dean

Genomics· July 2003

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