Publications by authors named "Jake Crawford"

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Best holdout assessment is sufficient for cancer transcriptomic model selection.
Jake Crawford, Maria Chikina, Casey S Greene

Patterns (N Y)· December 2024

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Optimizer's dilemma: optimization strongly influences model selection in transcriptomic prediction.
Jake Crawford, Maria Chikina, Casey S Greene

Bioinform Adv· January 2024

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CAJAL enables analysis and integration of single-cell morphological data using metric geometry.
Kiya W Govek, Patrick Nicodemus, Yuxuan Lin, Jake Crawford, Artur B Saturnino

Nat Commun· June 2023

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The effect of non-linear signal in classification problems using gene expression.
Benjamin J Heil, Jake Crawford, Casey S Greene

PLoS Comput Biol· March 2023

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wenda_gpu: fast domain adaptation for genomic data.
Ariel A Hippen, Jake Crawford, Jacob R Gardner, Casey S Greene

Bioinformatics· November 2022

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SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.
Alexandra J Lee, Dallas L Mould, Jake Crawford, Dongbo Hu, Rani K Powers

Genomics Proteomics Bioinformatics· October 2022

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Widespread redundancy in -omics profiles of cancer mutation states.
Jake Crawford, Brock C Christensen, Maria Chikina, Casey S Greene

Genome Biol· June 2022

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Incorporating biological structure into machine learning models in biomedicine.
Jake Crawford, Casey S Greene

Curr Opin Biotechnol· June 2020

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MONET: a toolbox integrating top-performing methods for network modularization.
Mattia Tomasoni, Sergio Gómez, Jake Crawford, Weijia Zhang, Sarvenaz Choobdar

Bioinformatics· June 2020

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Redefining Second Stage of Labor: Number of Pushing Contractions.
Serin M Bok, Gabriela E Pena Carmona, Jake Crawford, Ramy Eskander, Mina Desai

AJP Rep· April 2020

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Assessment of network module identification across complex diseases.
Sarvenaz Choobdar, Mehmet E Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang

Nat Methods· September 2019

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Retraction Note: detangling PPI networks to uncover functionally meaningful clusters.
Sarah Hall-Swan, Jake Crawford, Rebecca Newman, Lenore J Cowen

BMC Syst Biol· November 2018

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Detangling PPI networks to uncover functionally meaningful clusters.
Sarah Hall-Swan, Jake Crawford, Rebecca Newman, Lenore J Cowen

BMC Syst Biol· March 2018

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Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs.
Jennifer Listgarten, Michael Weinstein, Benjamin P Kleinstiver, Alexander A Sousa, J Keith Joung, Jake Crawford

Nat Biomed Eng· January 2018

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