Publications by authors named "Jakub Ridl"

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Germline-restricted chromosome of songbirds has different centromere compared to regular chromosomes.
Jakub Rídl, Dmitrij Dedukh, Zuzana Halenková, Stephen A Schlebusch, Vladimír Beneš

Heredity (Edinb)· July 2025

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Programmed DNA elimination drives rapid genomic innovation in two thirds of all bird species.
Francisco J Ruiz-Ruano, Stephen A Schlebusch, Niki Vontzou, Hugo Moreno, Matthew T Biegler, Jakub Ridl

bioRxiv· July 2025

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Rapid gene content turnover on the germline-restricted chromosome in songbirds.
Stephen A Schlebusch, Jakub Rídl, Manon Poignet, Francisco J Ruiz-Ruano, Jiří Reif

Nat Commun· July 2023

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sp. nov., a new cold-adapted member of the family Micrococcaceae isolated from Antarctic fellfield soil.
Patricie Vodickova, Jachym Suman, Eva Benesova, Michal Strejcek, Meina Neumann-Schaal, Jakub Ridl

Int J Syst Evol Microbiol· October 2022

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Genomic analysis of Acinetobacter pittii CEP14 reveals its extensive biodegradation capabilities, including cometabolic degradation of cis-1,2-dichloroethene.
Miguel Desmarais, Serena Fraraccio, Iva Dolinova, Jakub Ridl, Hynek Strnad

Antonie Van Leeuwenhoek· August 2022

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Population Genomics of Microbial Biostalactites: Non-recombinogenic Genome Islands and Microdiversification by Transposons.
Kateřina Burkartová, Jiří Dresler, Jakub Rídl, Lukáš Falteisek

Front Microbiol· February 2022

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Genomic analysis of dibenzofuran-degrading Pseudomonas veronii strain Pvy reveals its biodegradative versatility.
Eglantina Lopez-Echartea, Jachym Suman, Tereza Smrhova, Jakub Ridl, Petr Pajer

G3 (Bethesda)· February 2021

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Pseudogemmobacter bohemicus gen. nov., sp. nov., a novel taxon from the Rhodobacteraceae family isolated from heavy-metal-contaminated sludge.
Jachym Suman, Andrea Zubrova, Katerina Rojikova, Radko Pechar, Pavel Svec, Jakub Ridl

Int J Syst Evol Microbiol· August 2019

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Genomic islands of differentiation in two songbird species reveal candidate genes for hybrid female sterility.
Libor Mořkovský, Václav Janoušek, Jiří Reif, Jakub Rídl, Jan Pačes

Mol Ecol· February 2018

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Complete genome sequence of JAB1 (=DSM 26533), a versatile degrader of organic pollutants.
Jakub Ridl, Jachym Suman, Serena Fraraccio, Miluse Hradilova, Michal Strejcek

Stand Genomic Sci· February 2018

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Hybrid asexuality as a primary postzygotic barrier between nascent species: On the interconnection between asexuality, hybridization and speciation.
Karel Janko, Jan Pačes, Hilde Wilkinson-Herbots, Rui J Costa, Jan Roslein

Mol Ecol· January 2018

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Plants Rather than Mineral Fertilization Shape Microbial Community Structure and Functional Potential in Legacy Contaminated Soil.
Jakub Ridl, Michal Kolar, Michal Strejcek, Hynek Strnad, Petr Stursa

Front Microbiol· July 2016

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Effects of Secondary Plant Metabolites on Microbial Populations: Changes in Community Structure and Metabolic Activity in Contaminated Environments.
Lucie Musilova, Jakub Ridl, Marketa Polivkova, Tomas Macek, Ondrej Uhlik

Int J Mol Sci· July 2016

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Hunting Down Frame Shifts: Ecological Analysis of Diverse Functional Gene Sequences.
Michal Strejcek, Qiong Wang, Jakub Ridl, Ondrej Uhlik

Front Microbiol· December 2015

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Scrimer: designing primers from transcriptome data.
Libor Mořkovský, Jan Pačes, Jakub Rídl, Radka Reifová

Mol Ecol Resour· November 2015

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Lateral gene transfer and gene duplication played a key role in the evolution of Mastigamoeba balamuthi hydrogenosomes.
Eva Nývltová, Courtney W Stairs, Ivan Hrdý, Jakub Rídl, Jan Mach

Mol Biol Evol· April 2015

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Bacterial acquisition of hexachlorobenzene-derived carbon in contaminated soil.
Ondrej Uhlik, Michal Strejcek, Jan Vondracek, Lucie Musilova, Jakub Ridl

Chemosphere· October 2014

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Plant secondary metabolite-induced shifts in bacterial community structure and degradative ability in contaminated soil.
Ondrej Uhlik, Lucie Musilova, Jakub Ridl, Miluse Hroudova, Cestmir Vlcek

Appl Microbiol Biotechnol· October 2013

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The mitochondrion-like organelle of Trimastix pyriformis contains the complete glycine cleavage system.
Zuzana Zubáčová, Lukáš Novák, Jitka Bublíková, Vojtěch Vacek, Jan Fousek

PLoS One· September 2013

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Altered gut microbiota promotes colitis-associated cancer in IL-1 receptor-associated kinase M-deficient mice.
Klara Klimesova, Miloslav Kverka, Zuzana Zakostelska, Tomas Hudcovic, Tomas Hrncir, Jakub Ridl

Inflamm Bowel Dis· May 2013

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New insight into transcription of human endogenous retroviral elements.
Jan Pačes, Yao-Ting Huang, Václav Pačes, Jakub Rídl, Chung-Ming Chang

N Biotechnol· March 2013

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Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil.
Ondrej Uhlik, Jiri Wald, Michal Strejcek, Lucie Musilova, Jakub Ridl

PLoS One· January 2013

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Diversity, phylogeny and expression patterns of Pou and Six homeodomain transcription factors in hydrozoan jellyfish Craspedacusta sowerbyi.
Miluse Hroudova, Petr Vojta, Hynek Strnad, Zdenek Krejcik, Jakub Ridl

PLoS One· September 2012

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Lysate of probiotic Lactobacillus casei DN-114 001 ameliorates colitis by strengthening the gut barrier function and changing the gut microenvironment.
Zuzana Zakostelska, Miloslav Kverka, Klara Klimesova, Pavel Rossmann, Jakub Mrazek, Jakub Ridl

PLoS One· April 2012

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Active and total microbial communities in forest soil are largely different and highly stratified during decomposition.
Petr Baldrian, Miroslav Kolařík, Martina Stursová, Jan Kopecký, Vendula Valášková

ISME J· February 2012

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