Publications by authors named "James Cuff"

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The medical science DMZ: a network design pattern for data-intensive medical science.
Sean Peisert, Eli Dart, William Barnett, Edward Balas, James Cuff

J Am Med Inform Assoc· March 2018

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Microscale High-Throughput Experimentation as an Enabling Technology in Drug Discovery: Application in the Discovery of (Piperidinyl)pyridinyl-1H-benzimidazole Diacylglycerol Acyltransferase 1 Inhibitors.
Tim Cernak, Nathan J Gesmundo, Kevin Dykstra, Yang Yu, Zhicai Wu, James Cuff

J Med Chem· May 2017

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The Medical Science DMZ.
Sean Peisert, William Barnett, Eli Dart, James Cuff, Robert L Grossman

J Am Med Inform Assoc· November 2016

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Systematic approach to conformational sampling for assigning absolute configuration using vibrational circular dichroism.
Edward C Sherer, Claire H Lee, Joseph Shpungin, James F Cuff, Chenxiao Da

J Med Chem· January 2014

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A high-resolution map of human evolutionary constraint using 29 mammals.
Kerstin Lindblad-Toh, Manuel Garber, Or Zuk, Michael F Lin, Brian J Parker, James Cuff

Nature· October 2011

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A cascade approach to cyclic aminonitrones: reaction discovery, mechanism, and scope.
Rojita Sharma, Paul G Bulger, Michael McNevin, Peter G Dormer, Richard G Ball, James F Cuff

Org Lett· August 2009

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Distinguishing protein-coding and noncoding genes in the human genome.
Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff

Proc Natl Acad Sci U S A· December 2007

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Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
Elliott H Margulies, Gregory M Cooper, George Asimenos, Daryl J Thomas, Colin N Dewey, James Cuff

Genome Res· June 2007

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Nature· June 2007

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Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.
Tarjei S Mikkelsen, Matthew J Wakefield, Bronwen Aken, Chris T Amemiya, Jean L Chang, James Cuff

Nature· May 2007

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Bradley E Bernstein, Tarjei S Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J Huebert, James Cuff

Cell· April 2006

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Genome sequence, comparative analysis and haplotype structure of the domestic dog.
Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, James Cuff

Nature· December 2005

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An overview of Ensembl.
Ewan Birney, T Daniel Andrews, Paul Bevan, Mario Caccamo, Yuan Chen, James Cuff

Genome Res· May 2004

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The Ensembl computing architecture.
James A Cuff, Guy M P Coates, Tim J R Cutts, Mark Rae

Genome Res· May 2004

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The Jalview Java alignment editor.
Michele Clamp, James Cuff, Stephen M Searle, Geoffrey J Barton

Bioinformatics· February 2004

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Initial sequencing and comparative analysis of the mouse genome.

Nature· December 2002

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