Publications by authors named "James Samuelson"

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Distinct structural and functional heterochromatin partitioning of lamin B1 and lamin B2 revealed using genome-wide nicking enzyme epitope targeted DNA sequencing.
Sagnik Sen, Pierre-Olivier Estève, Karthikeyan Raman, Julie Beaulieu, Hang Gyeong Chin, James C Samuelson

Nucleic Acids Res· January 2025

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Erratum for Robichon et al., "Engineering BL21(DE3) Derivative Strains To Minimize Protein Contamination after Purification by Immobilized Metal Affinity Chromatography".
Carine Robichon, Jianying Luo, Thomas B Causey, Jack S Benner, James C Samuelson

Appl Environ Microbiol· November 2023

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Comparative site-specific N-glycoproteome analysis reveals aberrant N-glycosylation and gives insights into mannose-6-phosphate pathway in cancer.
Minyong Chen, Diego M Assis, Matthieu Benet, Colleen M McClung, Elizabeth A Gordon, James C Samuelson

Commun Biol· January 2023

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Guidelines for nucleic acid template design for optimal cell-free protein synthesis using an Escherichia coli reconstituted system or a lysate-based system.
Haruichi Asahara, Paula Magnelli, Xiaofeng Shi, Corinna Tuckey, Ying Zhou, James C Samuelson

Methods Enzymol· March 2022

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Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA.
Romualdas Vaisvila, V K Chaithanya Ponnaluri, Zhiyi Sun, Bradley W Langhorst, Lana Saleh, James C Samuelson

Genome Res· July 2021

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Abuse-Deterrent Opioid Formulations and the Opioid Crisis: A Pharmacist's Perspective.
Shannon Gadd, Nicholas Cox, James Samuelson, Amy Kenney, Kyle Turner

Ther Drug Monit· February 2021

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Review of Ex-Acute: A Former Hospital CEO Tells All on What's Wrong with American Healthcare, by J. Luke.
James Samuelson

Popul Health Manag· February 2018

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An engineered high affinity Fbs1 carbohydrate binding protein for selective capture of N-glycans and N-glycopeptides.
Minyong Chen, Xiaofeng Shi, Rebecca M Duke, Cristian I Ruse, Nan Dai, James C Samuelson

Nat Commun· May 2017

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A DsbA-Deficient Periplasm Enables Functional Display of a Protein with Redox-Sensitive Folding on M13 Phage.
Minyong Chen, James C Samuelson

Biochemistry· June 2016

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Leveraging modern DNA assembly techniques for rapid, markerless genome modification.
Ilya B Tikh, James C Samuelson

Biol Methods Protoc· March 2016

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Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering.
Yogesh K Gupta, Lin Yang, Siu-Hong Chan, James C Samuelson, Shuang-yong Xu

J Mol Biol· July 2012

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Engineering Escherichia coli BL21(DE3) derivative strains to minimize E. coli protein contamination after purification by immobilized metal affinity chromatography.
Carine Robichon, Jianying Luo, Thomas B Causey, Jack S Benner, James C Samuelson

Appl Environ Microbiol· July 2011

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Recent developments in difficult protein expression: a guide to E. coli strains, promoters, and relevant host mutations.
James C Samuelson

Methods Mol Biol· March 2011

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Engineering BspQI nicking enzymes and application of N.BspQI in DNA labeling and production of single-strand DNA.
Penghua Zhang, Priscilla Hiu-Mei Too, James C Samuelson, Siu-Hong Chan, Tamas Vincze

Protein Expr Purif· February 2010

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Rational design of a fusion partner for membrane protein expression in E. coli.
Jianying Luo, Julie Choulet, James C Samuelson

Protein Sci· August 2009

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Structures of the rare-cutting restriction endonuclease NotI reveal a unique metal binding fold involved in DNA binding.
Abigail R Lambert, Django Sussman, Betty Shen, Robert Maunus, Jay Nix, James Samuelson

Structure· April 2008

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Discovery of natural nicking endonucleases Nb.BsrDI and Nb.BtsI and engineering of top-strand nicking variants from BsrDI and BtsI.
Shuang-Yong Xu, Zhenyu Zhu, Penghua Zhang, Siu-Hong Chan, James C Samuelson

Nucleic Acids Res· September 2007

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BstYI bound to noncognate DNA reveals a "hemispecific" complex: implications for DNA scanning.
Sharon A Townson, James C Samuelson, Yongming Bao, Shuang-Yong Xu, Aneel K Aggarwal

Structure· April 2007

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Engineering a rare-cutting restriction enzyme: genetic screening and selection of NotI variants.
James C Samuelson, Richard D Morgan, Jack S Benner, Toby E Claus, Stephanie L Packard

Nucleic Acids Res· February 2006

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Implications for switching restriction enzyme specificities from the structure of BstYI bound to a BglII DNA sequence.
Sharon A Townson, James C Samuelson, Shuang-Yong Xu, Aneel K Aggarwal

Structure· May 2005

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The isolation of strand-specific nicking endonucleases from a randomized SapI expression library.
James C Samuelson, Zhenyu Zhu, Shuang-yong Xu

Nucleic Acids Res· July 2004

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Crystal structure of BstYI at 1.85A resolution: a thermophilic restriction endonuclease with overlapping specificities to BamHI and BglII.
Sharon A Townson, James C Samuelson, Eva Scheuring Vanamee, Thomas A Edwards, Carlos R Escalante

J Mol Biol· May 2004

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Engineering strand-specific DNA nicking enzymes from the type IIS restriction endonucleases BsaI, BsmBI, and BsmAI.
Zhenyu Zhu, James C Samuelson, Jing Zhou, Andrew Dore, Shuang-Yong Xu

J Mol Biol· March 2004

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Versatility of inner membrane protein biogenesis in Escherichia coli.
Linda Fröderberg, Edith Houben, James C Samuelson, Minyong Chen, Sei-Kyoung Park

Mol Microbiol· February 2003

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Directed evolution of restriction endonuclease BstYI to achieve increased substrate specificity.
James C Samuelson, Shuang-yong Xu

J Mol Biol· June 2002

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