Publications by authors named "Jan Peter Nap"

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Corrigendum: Towards recommendations for metadata and data handling in plant phenotyping.
Pawel Krajewski, Dijun Chen, Hanna Cwiek, Aalt D J van Dijk, Fabio Fiorani, Jan Peter Nap

J Exp Bot· March 2018

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pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment.
Sven Warris, N Roshan N Timal, Marcel Kempenaar, Arne M Poortinga, Henri van de Geest, Jan-Peter Nap

PLoS One· February 2018

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Similarities between plant traits based on their connection to underlying gene functions.
Jan-Peter Nap, Gabino F Sanchez-Perez, Aalt D J van Dijk

PLoS One· October 2017

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Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS.
Sven Warris, Feyruz Yalcin, Katherine J L Jackson, Jan Peter Nap

PLoS One· February 2016

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Compact tomato seedlings and plants upon overexpression of a tomato chromatin remodelling ATPase gene.
Adam Folta, Joachim W Bargsten, Ton Bisseling, Jan-Peter Nap, Ludmila Mlynarova

Plant Biotechnol J· February 2016

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Towards recommendations for metadata and data handling in plant phenotyping.
Paweł Krajewski, Dijun Chen, Hanna Ćwiek, Aalt D J van Dijk, Fabio Fiorani, Jan Peter Nap

J Exp Bot· September 2015

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Reduced seed germination in Arabidopsis over-expressing SWI/SNF2 ATPase genes.
Hendrika A C F Leeggangers, Adam Folta, Aleksandra Muras, Jan-Peter Nap, Ludmila Mlynarova

Physiol Plant· February 2015

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Snf2 family gene distribution in higher plant genomes reveals DRD1 expansion and diversification in the tomato genome.
Joachim W Bargsten, Adam Folta, Ludmila Mlynárová, Jan-Peter Nap

PLoS One· December 2014

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Prioritization of candidate genes in QTL regions based on associations between traits and biological processes.
Joachim W Bargsten, Jan-Peter Nap, Gabino F Sanchez-Perez, Aalt D J van Dijk

BMC Plant Biol· December 2014

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Over-expression of Arabidopsis AtCHR23 chromatin remodeling ATPase results in increased variability of growth and gene expression.
Adam Folta, Edouard I Severing, Julian Krauskopf, Henri van de Geest, Jan Verver, Jan-Peter Nap

BMC Plant Biol· March 2014

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Fast selection of miRNA candidates based on large-scale pre-computed MFE sets of randomized sequences.
Sven Warris, Sander Boymans, Iwe Muiser, Michiel Noback, Wim Krijnen, Jan-Peter Nap

BMC Res Notes· January 2014

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Unexpectedly rapid IS1 transposition into an Arabidopsis chromatin remodeling gene.
Karol J Rogowski, Adam Folta, Joachim W Bargsten, Jan-Peter Nap, Ludmila Mlynarova

Transgenic Res· August 2013

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Genomic analysis of the native European Solanum species, S. dulcamara.
Nunzio D'Agostino, Tomek Golas, Henri van de Geest, Aureliano Bombarely, Thikra Dawood, Jan-Peter Nap

BMC Genomics· May 2013

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In silico miRNA prediction in metazoan genomes: balancing between sensitivity and specificity.
Ate van der Burgt, Mark W J E Fiers, Jan-Peter Nap, Roeland C H J van Ham

BMC Genomics· April 2009

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The SWI/SNF chromatin-remodeling gene AtCHR12 mediates temporary growth arrest in Arabidopsis thaliana upon perceiving environmental stress.
Ludmila Mlynárová, Jan-Peter Nap, Ton Bisseling

Plant J· September 2007

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Local coexpression domains in the genome of rice show no microsynteny with Arabidopsis domains.
Xin-Ying Ren, Willem J Stiekema, Jan-Peter Nap

Plant Mol Biol· September 2007

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Sequence polymorphisms cause many false cis eQTLs.
Rudi Alberts, Peter Terpstra, Yang Li, Rainer Breitling, Jan-Peter Nap

PLoS One· July 2007

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A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
Rudi Alberts, Peter Terpstra, Menno Hardonk, Leonid V Bystrykh, Gerald de Haan, Jan-Peter Nap

BMC Bioinformatics· April 2007

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The (epi)genetics of human synovial sarcoma.
Diederik R H de Bruijn, Jan-Peter Nap, Ad Geurts van Kessel

Genes Chromosomes Cancer· February 2007

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In plants, highly expressed genes are the least compact.
Xin-Ying Ren, Oscar Vorst, Mark W E J Fiers, Willem J Stiekema, Jan-Peter Nap

Trends Genet· October 2006

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Directed microspore-specific recombination of transgenic alleles to prevent pollen-mediated transmission of transgenes.
Ludmila Mlynárová, Anthony J Conner, Jan-Peter Nap

Plant Biotechnol J· July 2006

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DNAVis: interactive visualization of comparative genome annotations.
Mark W E J Fiers, Huub van de Wetering, Tim H J M Peeters, Jarke J van Wijk, Jan-Peter Nap

Bioinformatics· February 2006

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Tentacles of in vitro-grown round-leaf sundew (Drosera rotundifolia L.) show induction of chitinase activity upon mimicking the presence of prey.
Ildikó Matusíková, Ján Salaj, Jana Moravcíková, Ludmila Mlynárová, Jan-Peter Nap

Planta· December 2005

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Local coexpression domains of two to four genes in the genome of Arabidopsis.
Xin-Ying Ren, Mark W E J Fiers, Willem J Stiekema, Jan-Peter Nap

Plant Physiol· June 2005

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Seed-expressed fluorescent proteins as versatile tools for easy (co)transformation and high-throughput functional genomics in Arabidopsis.
Antoine R Stuitje, Elizabeth C Verbree, Karin H van der Linden, Elzbieta M Mietkiewska, Jan-Peter Nap

Plant Biotechnol J· July 2003

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