Publications by authors named "Rudi Alberts"

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Transcriptomic profiling of lung alveolar macrophages reveals distinct contribution of sterol metabolism in macrophage response to Cryptococcus gattii infection.
Siranart Jeerawattanawart, Adithap Hansakon, Rudi Alberts, Yongliang Zhang, Pornpimon Angkasekwinai

PLoS One· September 2025

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Alterations in colorectal cancer virome and its persistence after surgery.
Si Xian Ho, Jia-Hao Law, Chin-Wen Png, Rudi Alberts, Yongliang Zhang

Sci Rep· February 2024

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Annexin-A1 deficiency attenuates stress-induced tumor growth fatty acid metabolism in mice: an Integrated multiple omics analysis on the stress- microbiome-metabolite-epigenetic-oncology (SMMEO) axis.
Jianzhou Cui, Karishma Sachaphibulkij, Wen Shiun Teo, Hong Meng Lim, Li Zou, Rudi Alberts

Theranostics· June 2022

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Integration and Reanalysis of Four RNA-Seq Datasets Including BALF, Nasopharyngeal Swabs, Lung Biopsy, and Mouse Models Reveals Common Immune Features of COVID-19.
Rudi Alberts, Sze Chun Chan, Qian-Fang Meng, Shan He, Lang Rao

Immune Netw· June 2022

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ZDOG: zooming in on dominating genes with mutations in cancer pathways.
Rudi Alberts, Jinyu Chen, Louxin Zhang

BMC Bioinformatics· December 2019

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MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.
K Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Rudi Alberts

Bioinformatics· March 2019

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Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome.
Arnau Vich Vila, Floris Imhann, Valerie Collij, Soesma A Jankipersadsing, Thomas Gurry, Rudi Alberts

Sci Transl Med· December 2018

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Genetic association analysis identifies variants associated with disease progression in primary sclerosing cholangitis.
Rudi Alberts, Elisabeth M G de Vries, Elizabeth C Goode, Xiaojun Jiang, Fotis Sampaziotis

Gut· August 2018

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Genomic and Expression Analyses Identify a Disease-Modifying Variant for Fibrostenotic Crohn's Disease.
Marijn C Visschedijk, Lieke M Spekhorst, Shih-Chin Cheng, Ellen S van Loo, B H Dianne Jansen, Rudi Alberts

J Crohns Colitis· April 2018

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Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease.
Floris Imhann, Arnau Vich Vila, Marc Jan Bonder, Jingyuan Fu, Dirk Gevers, Rudi Alberts

Gut· January 2018

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Pooled Resequencing of 122 Ulcerative Colitis Genes in a Large Dutch Cohort Suggests Population-Specific Associations of Rare Variants in MUC2.
Marijn C Visschedijk, Rudi Alberts, Soren Mucha, Patrick Deelen, Dirk J de Jong

PLoS One· August 2017

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Drug Repositioning in Inflammatory Bowel Disease Based on Genetic Information.
Valerie Collij, Eleonora A M Festen, Rudi Alberts, Rinse K Weersma

Inflamm Bowel Dis· November 2016

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Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Jimmy Z Liu, Suzanne van Sommeren, Hailiang Huang, Siew C Ng, Rudi Alberts

Nat Genet· September 2015

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Systems genetics of liver fibrosis: identification of fibrogenic and expression quantitative trait loci in the BXD murine reference population.
Rabea A Hall, Roman Liebe, Katrin Hochrath, Andrey Kazakov, Rudi Alberts

PLoS One· November 2014

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Performance of the Montreal classification for inflammatory bowel diseases.
Lieke M Spekhorst, Marijn C Visschedijk, Rudi Alberts, Eleonora A Festen, Egbert-Jan van der Wouden

World J Gastroenterol· November 2014

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ATR-FTIR spectroscopy reveals genomic loci regulating the tissue response in high fat diet fed BXD recombinant inbred mouse strains.
Ayca Dogan, Peter Lasch, Christina Neuschl, Marion K Millrose, Rudi Alberts

BMC Genomics· June 2013

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Analysis of the lung transcriptome in Mycobacterium tuberculosis-infected mice reveals major differences in immune response pathways between TB-susceptible and resistant hosts.
Galina Shepelkova, Claudia Pommerenke, Rudi Alberts, Robert Geffers, Vladimir Evstifeev

Tuberculosis (Edinb)· March 2013

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Distinct gene loci control the host response to influenza H1N1 virus infection in a time-dependent manner.
Tatiana Nedelko, Heike Kollmus, Frank Klawonn, Sabine Spijker, Lu Lu, Rudi Alberts

BMC Genomics· August 2012

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Bioinformatics tools and database resources for systems genetics analysis in mice--a short review and an evaluation of future needs.
Caroline Durrant, Morris A Swertz, Rudi Alberts, Danny Arends, Steffen Möller

Brief Bioinform· March 2012

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Expression QTL mapping in regulatory and helper T cells from the BXD family of strains reveals novel cell-specific genes, gene-gene interactions and candidate genes for auto-immune disease.
Rudi Alberts, Hairong Chen, Claudia Pommerenke, August B Smit, Sabine Spijker

BMC Genomics· December 2011

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Genome-wide analysis of the mouse lung transcriptome reveals novel molecular gene interaction networks and cell-specific expression signatures.
Rudi Alberts, Lu Lu, Robert W Williams, Klaus Schughart

Respir Res· May 2011

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A new mouse model reveals a critical role for host innate immunity in resistance to Rift Valley fever.
Tânia Zaverucha do Valle, Agnès Billecocq, Laurent Guillemot, Rudi Alberts, Céline Gommet

J Immunol· November 2010

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QTLminer: identifying genes regulating quantitative traits.
Rudi Alberts, Klaus Schughart

BMC Bioinformatics· October 2010

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XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments.
Morris A Swertz, K Joeri van der Velde, Bruno M Tesson, Richard A Scheltema, Danny Arends, Rudi Alberts

Genome Biol· September 2010

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Data-driven assessment of eQTL mapping methods.
Jacob J Michaelson, Rudi Alberts, Klaus Schughart, Andreas Beyer

BMC Genomics· September 2010

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