Publications by authors named "Jason D Fernandes"

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Correction: Functional and structural segregation of overlapping helices in HIV-1.
Maliheh Safari, Bhargavi Jayaraman, Henni Zommer, Shumin Yang, Cynthia Smith, Jason D Fernandes

Elife· January 2025

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Functional and structural segregation of overlapping helices in HIV-1.
Maliheh Safari, Bhargavi Jayaraman, Henni Zommer, Shumin Yang, Cynthia Smith, Jason D Fernandes

Elife· May 2022

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A high-quality bonobo genome refines the analysis of hominid evolution.
Yafei Mao, Claudia R Catacchio, LaDeana W Hillier, David Porubsky, Ruiyang Li, Jason D Fernandes

Nature· June 2021

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The UCSC Genome Browser database: 2021 update.
Jairo Navarro Gonzalez, Ann S Zweig, Matthew L Speir, Daniel Schmelter, Kate R Rosenbloom, Jason D Fernandes

Nucleic Acids Res· January 2021

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Stability of SARS-CoV-2 phylogenies.
Yatish Turakhia, Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Jason D Fernandes

PLoS Genet· November 2020

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The UCSC SARS-CoV-2 Genome Browser.
Jason D Fernandes, Angie S Hinrichs, Hiram Clawson, Jairo Navarro Gonzalez, Brian T Lee

Nat Genet· October 2020

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Co-option of the lineage-specific retrotransposon in the gibbon genome.
Mariam Okhovat, Kimberly A Nevonen, Brett A Davis, Pryce Michener, Samantha Ward, Jason D Fernandes

Proc Natl Acad Sci U S A· August 2020

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A survey-based analysis of the academic job market.
Jason D Fernandes, Sarvenaz Sarabipour, Christopher T Smith, Natalie M Niemi, Nafisa M Jadavji

Elife· June 2020

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The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families.
Jason D Fernandes, Armando Zamudio-Hurtado, Hiram Clawson, W James Kent, David Haussler

Mob DNA· March 2020

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Highly Mutable Linker Regions Regulate HIV-1 Rev Function and Stability.
Bhargavi Jayaraman, Jason D Fernandes, Shumin Yang, Cynthia Smith, Alan D Frankel

Sci Rep· March 2019

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Functional Segregation of Overlapping Genes in HIV.
Jason D Fernandes, Tyler B Faust, Nicolas B Strauli, Cynthia Smith, David C Crosby

Cell· December 2016

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Oligomeric viral proteins: small in size, large in presence.
Bhargavi Jayaraman, Amber M Smith, Jason D Fernandes, Alan D Frankel

Crit Rev Biochem Mol Biol· September 2016

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A structurally plastic ribonucleoprotein complex mediates post-transcriptional gene regulation in HIV-1.
Jason D Fernandes, David S Booth, Alan D Frankel

Wiley Interdiscip Rev RNA· July 2016

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