Publications by authors named "Jason Papin"

Claim this Profile
C
Characterizing Spatiotemporal Expansion of Pseudomonas aeruginosa Communities in Polymer and Mucin Gel Environments.
Morgan S Kim, Glynis L Kolling, Katharina Ribbeck, Shayn M Peirce, Jason A Papin

Biotechnol Bioeng· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Metabolic network analysis of Crohn's disease reveals sex- and age-specific cellular phenotypes.
Connor J Moore, Mariska Batavia, William Shao, Fatima Zulqarnain, Glynis L Kolling, Jason A Papin

Cell Syst· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Ten simple rules for developing a training program.
Leanna B Blevins, Amy M Harrigan, Kevin A Janes, Jason A Papin

PLoS Comput Biol· July 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Reframing the role of the objective function in its proper context for metabolic network modeling.
Mohammad Mazharul Islam, William Shao, Mariska Batavia, Roseanne M Ford, Bernhard O Palsson, Jason A Papin

Cell Syst· June 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A systems biology approach to evaluate potential probiotic candidates for women's vaginal health.
Emma M Glass, Glynis L Kolling, Jason A Papin

bioRxiv· June 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Genome-scale metabolic network reconstruction analysis identifies bacterial vaginosis-associated metabolic interactions.
Lillian R Dillard, Emma M Glass, Glynis L Kolling, Krystal Thomas-White, Fiorella Wever, Jason A Papin

Nat Commun· May 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Applying a polysaccharide lyase from to disrupt alginate exopolysaccharide produced by clinical isolates.
Samantha M Felton, Nikki Akula, Glynis L Kolling, Parastoo Azadi, Ian Black, Jason A Papin

Appl Environ Microbiol· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Ten simple rules for good model-sharing practices.
Ismael Kherroubi Garcia, Christopher Erdmann, Sandra Gesing, Michael Barton, Lauren Cadwallader, Jason Papin

PLoS Comput Biol· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Improvement in the prediction power of an astrocyte genome-scale metabolic model using multi-omic data.
Andrea Angarita-Rodríguez, Nicolás Mendoza-Mejía, Janneth González, Jason Papin, Andrés Felipe Aristizábal

Front Syst Biol· January 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
Niche-specific metabolic phenotypes can be used to identify antimicrobial targets in pathogens.
Emma M Glass, Lillian R Dillard, Glynis L Kolling, Andrew S Warren, Jason A Papin

PLoS Biol· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Celebrating a body of work.
Jason A Papin, Feilim Mac Gabhann, Virginia E Pitzer

PLoS Comput Biol· September 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Model-driven characterization of functional diversity of clinical isolates with broadly representative phenotypes.
Mohammad Mazharul Islam, Glynis L Kolling, Emma M Glass, Joanna B Goldberg, Jason A Papin

Microb Genom· June 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
-
-mucus interactions encompass shifts in gene expression, metabolism, and biofilm formation.
Kathleen L Furtado, Lucas Plott, Matthew Markovetz, Deborah Powers, Hao Wang, Jason Papin

mSphere· June 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Spatial transcriptome-guided multi-scale framework connects P. aeruginosa metabolic states to oxidative stress biofilm microenvironment.
Tracy J Kuper, Mohammad Mazharul Islam, Shayn M Peirce-Cottler, Jason A Papin, Roseanne M Ford

PLoS Comput Biol· April 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
-
-mucus interactions encompass shifts in gene expression, metabolism, and biofilm formation.
Kathleen L Furtado, Lucas Plott, Matthew Markovetz, Deborah Powers, Hao Wang, Jason Papin

bioRxiv· February 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism.
Bonnie V Dougherty, Connor J Moore, Kristopher D Rawls, Matthew L Jenior, Bryan Chun, Jason A Papin

PLoS Comput Biol· February 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization.
Philip J Tubergen, Greg Medlock, Anni Moore, Xiaomu Zhang, Jason A Papin

PLoS Comput Biol· December 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Model-driven characterization of functional diversity of clinical isolates with broadly representative phenotypes.
Mohammad Mazharul Islam, Glynis L Kolling, Emma M Glass, Joanna B Goldberg, Jason A Papin

bioRxiv· October 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Transcriptome-guided metabolic network analysis reveals rearrangements of carbon flux distribution in during neutrophil co-culture.
Aimee D Potter, Christopher M Baiocco, Jason A Papin, Alison K Criss

mSystems· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The blossoming of methods and software in computational biology.
Feilim Mac Gabhann, Virginia E Pitzer, Jason A Papin

PLoS Comput Biol· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Metabolic modeling of sex-specific liver tissue suggests mechanism of differences in toxicological responses.
Connor J Moore, Christopher P Holstege, Jason A Papin

PLoS Comput Biol· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Systems-ecology designed bacterial consortium protects from severe infection.
Matthew L Jenior, Jhansi L Leslie, Glynis L Kolling, Laurie Archbald-Pannone, Deborah A Powers, Jason A Papin

bioRxiv· August 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-filling.
Matthew L Jenior, Emma M Glass, Jason A Papin

Bioinformatics· June 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
N
Network analysis of toxin production in Clostridioides difficile identifies key metabolic dependencies.
Deborah A Powers, Matthew L Jenior, Glynis L Kolling, Jason A Papin

PLoS Comput Biol· April 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Metabolic modeling of sex-specific tissue predicts mechanisms of differences in toxicological responses.
Connor J Moore, Christopher P Holstege, Jason A Papin

bioRxiv· February 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis