Publications by authors named "Jason Yim"

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Computational design of metallohydrolases.
Donghyo Kim, Seth M Woodbury, Woody Ahern, Doug Tischer, Alex Kang, Jason Yim

Nature· December 2025

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Atom-level enzyme active site scaffolding using RFdiffusion2.
Woody Ahern, Jason Yim, Doug Tischer, Saman Salike, Seth M Woodbury

Nat Methods· December 2025

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design of phospho-tyrosine peptide binders.
Magnus S Bauer, Jason Z Zhang, Kejia Wu, Gyu Rie Lee, Brian Coventry, Jason Yim

bioRxiv· September 2025

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Scalable emulation of protein equilibrium ensembles with generative deep learning.
Sarah Lewis, Tim Hempel, José Jiménez-Luna, Michael Gastegger, Yu Xie, Jason Yim

Science· August 2025

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Improved motif-scaffolding with SE(3) flow matching.
Jason Yim, Andrew Campbell, Emile Mathieu, Andrew Y K Foong, Michael Gastegger

ArXiv· July 2024

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Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design.
Andrew Campbell, Jason Yim, Regina Barzilay, Tom Rainforth, Tommi Jaakkola

ArXiv· June 2024

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De novo design of protein structure and function with RFdiffusion.
Joseph L Watson, David Juergens, Nathaniel R Bennett, Brian L Trippe, Jason Yim

Nature· August 2023

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Predicting conversion to wet age-related macular degeneration using deep learning.
Jason Yim, Reena Chopra, Terry Spitz, Jim Winkens, Annette Obika

Nat Med· June 2020

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