Publications by authors named "Jeff Froula"

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Preparing Mate-Paired Illumina Libraries Using Cre Recombinase.
Ze Peng, Nandita Nath, Zhiying Zhao, Jeff L Froula, Jan-Fang Cheng

Methods Mol Biol· April 2018

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Preparing Fosmid Mate-Paired Libraries Using Cre-LoxP Recombination.
Ze Peng, Jeff L Froula, Jan-Fang Cheng

Methods Mol Biol· April 2018

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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Jeff L Froula

Nat Methods· November 2017

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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep.
Janine Kamke, Priya Soni, Yang Li, Siva Ganesh, William J Kelly, Jeff Froula

BMC Res Notes· August 2017

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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation.
Janine Kamke, Sandra Kittelmann, Priya Soni, Yang Li, Michael Tavendale, Jeff Froula

Microbiome· October 2016

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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.
Matthew L Bendall, Sarah Lr Stevens, Leong-Keat Chan, Stephanie Malfatti, Patrick Schwientek, Jeff Froula

ISME J· July 2016

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The Epigenomic Landscape of Prokaryotes.
Matthew J Blow, Tyson A Clark, Chris G Daum, Adam M Deutschbauer, Alexey Fomenkov, Jeff Froula

PLoS Genet· February 2016

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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
Dongwan D Kang, Jeff Froula, Rob Egan, Zhong Wang

PeerJ· September 2015

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Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.
Weibing Shi, Christina D Moon, Sinead C Leahy, Dongwan Kang, Jeff Froula

Genome Res· September 2014

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Identification of novel biomass-degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation.
Hailan Piao, Jeff Froula, Changbin Du, Tae-Wan Kim, Erik R Hawley

Biotechnol Bioeng· August 2014

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Generation of long insert pairs using a Cre-LoxP Inverse PCR approach.
Ze Peng, Zhiying Zhao, Nandita Nath, Jeff L Froula, Alicia Clum

PLoS One· May 2012

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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics.
Shaomei He, Omri Wurtzel, Kanwar Singh, Jeff L Froula, Suzan Yilmaz

Nat Methods· October 2010

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