Publications by authors named "Tyson A Clark"

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Structural and functional diversity among Type III restriction-modification systems that confer host DNA protection via methylation of the N4 atom of cytosine.
Iain A Murray, Yvette A Luyten, Alexey Fomenkov, Nan Dai, Ivan R Corrêa, Tyson A Clark

PLoS One· November 2021

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Nearly Complete Genome Sequence of Brugia malayi Strain FR3.
Alan Tracey, Jeremy M Foster, Michael Paulini, Alexandra Grote, John Mattick, Tyson A Clark

Microbiol Resour Announc· June 2020

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Sex chromosome evolution in parasitic nematodes of humans.
Jeremy M Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Tyson A Clark

Nat Commun· April 2020

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CRISPR/Cas9-targeted enrichment and long-read sequencing of the Fuchs endothelial corneal dystrophy-associated TCF4 triplet repeat.
Nathaniel J Hafford-Tear, Yu-Chih Tsai, Amanda N Sadan, Beatriz Sanchez-Pintado, Christina Zarouchlioti, Tyson A Clark

Genet Med· September 2019

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Targeted Long-Read RNA Sequencing Demonstrates Transcriptional Diversity Driven by Splice-Site Variation in MYBPC3.
Alexandra Dainis, Elizabeth Tseng, Tyson A Clark, Ting Hon, Matthew Wheeler

Circ Genom Precis Med· May 2019

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Detailed analysis of HTT repeat elements in human blood using targeted amplification-free long-read sequencing.
Ida Höijer, Yu-Chih Tsai, Tyson A Clark, Paul Kotturi, Niklas Dahl

Hum Mutat· September 2018

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SMRT-Cappable-seq reveals complex operon variants in bacteria.
Bo Yan, Matthew Boitano, Tyson A Clark, Laurence Ettwiller

Nat Commun· September 2018

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Universal Alternative Splicing of Noncoding Exons.
Ira W Deveson, Marion E Brunck, James Blackburn, Elizabeth Tseng, Ting Hon, Tyson A Clark, Michael B Clark

Cell Syst· February 2018

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Methods for Genome-Wide Methylome Profiling of Campylobacter jejuni.
Kathy T Mou, Tyson A Clark, Usha K Muppirala, Andrew J Severin, Paul J Plummer

Methods Mol Biol· January 2018

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Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori.
Yogitha N Srikhanta, Rebecca J Gorrell, Peter M Power, Kirill Tsyganov, Matthew Boitano, Tyson A Clark

Sci Rep· November 2017

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Complete Genome Sequence of Strain CCRI-195ME, Isolated from the Middle Ear.
Aimee Tan, Luke V Blakeway, Lauren O Bakaletz, Matthew Boitano, Tyson A Clark

Genome Announc· May 2017

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Novel m4C modification in type I restriction-modification systems.
Richard D Morgan, Yvette A Luyten, Samuel A Johnson, Emily M Clough, Tyson A Clark

Nucleic Acids Res· November 2016

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DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates.
Mohamad R Abdul Sater, Araceli Lamelas, Guilin Wang, Tyson A Clark, Katharina Röltgen

PLoS One· June 2016

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Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.
Bo Wang, Elizabeth Tseng, Michael Regulski, Tyson A Clark, Ting Hon

Nat Commun· June 2016

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The Epigenomic Landscape of Prokaryotes.
Matthew J Blow, Tyson A Clark, Chris G Daum, Adam M Deutschbauer, Alexey Fomenkov

PLoS Genet· February 2016

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Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars.
Cary Pirone-Davies, Maria Hoffmann, Richard J Roberts, Tim Muruvanda, Ruth E Timme, Tyson A Clark

PLoS One· December 2015

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Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.
Jason L Weirather, Pegah Tootoonchi Afshar, Tyson A Clark, Elizabeth Tseng, Linda S Powers

Nucleic Acids Res· October 2015

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A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae.
John M Atack, Yogitha N Srikhanta, Kate L Fox, Joseph A Jurcisek, Kenneth L Brockman, Tyson A Clark

Nat Commun· July 2015

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Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System.
Rory A Eutsey, Evan Powell, Janina Dordel, Susannah J Salter, Tyson A Clark

mBio· June 2015

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Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9.
Alexandra L Bryson, Young Hwang, Scott Sherrill-Mix, Gary D Wu, James D Lewis, Tyson A Clark

mBio· June 2015

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Complete Genome Sequence Analysis of Bacillus subtilis T30.
Shuang-Yong Xu, Matthew Boitano, Tyson A Clark, Tamas Vincze, Alexey Fomenkov

Genome Announc· May 2015

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Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N(6)-adenine DNA methyltransferases of Neisseria meningitidis.
Kate L Seib, Freda E-C Jen, Aimee Tan, Adeana L Scott, Ritesh Kumar, Tyson A Clark

Nucleic Acids Res· April 2015

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A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data.
Kathy T Mou, Usha K Muppirala, Andrew J Severin, Tyson A Clark, Matthew Boitano

Front Microbiol· February 2015

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Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea.
Lukas Chavez, Yun Huang, Khai Luong, Suneet Agarwal, Lakshminarayan M Iyer, Tyson A Clark

Proc Natl Acad Sci U S A· December 2014

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A random six-phase switch regulates pneumococcal virulence via global epigenetic changes.
Ana Sousa Manso, Melissa H Chai, John M Atack, Leonardo Furi, Megan De Ste Croix, Tyson A Clark

Nat Commun· September 2014

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