Publications by authors named "Jeffrey Grethe"

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The Data Distillery: A Graph Framework for Semantic Integration and Querying of Biomedical Data.
Taha Mohseni Ahooyi, Benjamin Stear, J Alan Simmons, Vincent T Metzger, Praveen Kumar, Jeffrey S Grethe

bioRxiv· October 2025

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A Community Effort to Develop Common Data Elements for Pre-Clinical Spinal Cord Injury Research.
Britt A Fedor, Abel Torres-Espin, Romana Vavrek, Maryann E Martone, John L Bixby, Jeffrey S Grethe

Neurotrauma Rep· April 2025

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Data reporting quality and semantic interoperability increase with community-based data elements (CoDEs). Analysis of the open data commons for spinal cord injury (ODC-SCI).
Anushka Sheoran, Kenneth A Fond, Lex Maliga Davis, J Russell Huie, Romana Vavrek, Jeffrey S Grethe

Exp Neurol· March 2025

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Developing a multiscale neural connectivity knowledgebase of the autonomic nervous system.
Fahim T Imam, Thomas H Gillespie, Ilias Ziogas, Monique C Surles-Zeigler, Susan Tappan, Jeffrey S Grethe

Front Neuroinform· March 2025

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An infrastructure for qualified data sharing and team science in late-stage translational spinal cord injury research.
J Russell Huie, Abel Torres-Espin, Jeffrey Sacramento, Anastasia V Keller, Wilsaan M Joiner, Jeffrey S Grethe

Exp Neurol· January 2025

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Developing a Multiscale Neural Connectivity Knowledgebase of the Autonomic Nervous System.
Fahim T Imam, Thomas H Gillespie, Ilias Ziogas, Monique C Surles-Zeigler, Susan Tappan, Jeffrey S Grethe

bioRxiv· November 2024

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Toxicology knowledge graph for structural birth defects.
John Erol Evangelista, Daniel J B Clarke, Zhuorui Xie, Giacomo B Marino, Vivian Utti, Jeffrey S Grethe

Commun Med (Lond)· July 2023

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NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query.
Nazek Queder, Vivian B Tien, Sanu Ann Abraham, Sebastian Georg Wenzel Urchs, Karl G Helmer, Jeffrey S Grethe

Front Neuroinform· July 2023

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The Antibody Registry: ten years of registering antibodies.
Anita Bandrowski, Mason Pairish, Peter Eckmann, Jeffrey Grethe, Maryann E Martone

Nucleic Acids Res· January 2023

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Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project.
Monique C Surles-Zeigler, Troy Sincomb, Thomas H Gillespie, Bernard de Bono, Jacqueline Bresnahan, Jeffrey S Grethe

Front Neuroinform· August 2022

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Transcriptional regulatory networks of circulating immune cells in type 1 diabetes: A community knowledgebase.
Scott A Ochsner, Rudolf T Pillich, Deepali Rawool, Jeffrey S Grethe, Neil J McKenna

iScience· July 2022

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The Neuroimaging Data Model Linear Regression Tool (nidm_linreg): PyNIDM Project.
Ashmita Kumar, Albert Crowley, Nazek Queder, J B Poline, Satrajit S Ghosh, Jeffrey S Grethe

F1000Res· July 2022

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Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality.
Joe Menke, Peter Eckmann, Ibrahim Burak Ozyurt, Martijn Roelandse, Nathan Anderson, Jeffrey Grethe

J Med Internet Res· June 2022

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Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.
Jean-Baptiste Poline, David N Kennedy, Friedrich T Sommer, Giorgio A Ascoli, David C Van Essen, Jeffrey S Grethe

Neuroinformatics· April 2022

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Empowering Data Sharing and Analytics through the Open Data Commons for Traumatic Brain Injury Research.
Austin Chou, Abel Torres-Espín, J Russell Huie, Karen Krukowski, Sangmi Lee, Jeffrey S Grethe

Neurotrauma Rep· April 2022

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A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Mathew Birdsall Abrams, Jan G Bjaalie, Samir Das, Gary F Egan, Satrajit S Ghosh, Jeffrey S Grethe

Neuroinformatics· January 2022

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Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Mathew Birdsall Abrams, Jan G Bjaalie, Samir Das, Gary F Egan, Satrajit S Ghosh, Jeffrey S Grethe

Neuroinformatics· January 2022

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The SPARC DRC: Building a Resource for the Autonomic Nervous System Community.
Mahyar Osanlouy, Anita Bandrowski, Bernard de Bono, David Brooks, Antonino M Cassarà, Jeffrey S Grethe

Front Physiol· June 2021

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Antibody Watch: Text mining antibody specificity from the literature.
Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A William, Jeffrey S Grethe

PLoS Comput Biol· May 2021

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FAIR SCI Ahead: The Evolution of the Open Data Commons for Pre-Clinical Spinal Cord Injury Research.
Karim Fouad, John L Bixby, Alison Callahan, Jeffrey S Grethe, Lyn B Jakeman

J Neurotrauma· March 2020

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Bio-AnswerFinder: a system to find answers to questions from biomedical texts.
Ibrahim Burak Ozyurt, Anita Bandrowski, Jeffrey S Grethe

Database (Oxford)· January 2020

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Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts.
Chun-Nan Hsu, Anita E Bandrowski, Thomas H Gillespie, Jon Udell, Ko-Wei Lin, Jeffrey S Grethe

Comput Sci Eng· November 2019

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A data citation roadmap for scholarly data repositories.
Martin Fenner, Mercè Crosas, Jeffrey S Grethe, David Kennedy, Henning Hermjakob

Sci Data· April 2019

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Addendum: The FAIR Guiding Principles for scientific data management and stewardship.
Mark D Wilkinson, Michel Dumontier, Ijsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Jeffrey S Grethe

Sci Data· March 2019

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Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging.
David N Kennedy, Sanu A Abraham, Julianna F Bates, Albert Crowley, Satrajit Ghosh, Jeffrey S Grethe

Front Neuroinform· February 2019

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