Publications by authors named "Jeremy Sumner"

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Embedding of Markov matrices for .
Michael Baake, Jeremy Sumner

J Math Biol· July 2024

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Rearrangement Events on Circular Genomes.
Joshua Stevenson, Venta Terauds, Jeremy Sumner

Bull Math Biol· September 2023

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Evaluation of the Relative Performance of the Subflattenings Method for Phylogenetic Inference.
Joshua Stevenson, Barbara Holland, Michael Charleston, Jeremy Sumner

Bull Math Biol· January 2023

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A new algebraic approach to genome rearrangement models.
Venta Terauds, Jeremy Sumner

J Math Biol· May 2022

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A symmetry-inclusive algebraic approach to genome rearrangement.
Venta Terauds, Joshua Stevenson, Jeremy Sumner

J Bioinform Comput Biol· December 2021

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Correction to: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model.
Peter D Jarvis, Jeremy G Sumner

J Math Biol· June 2021

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The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives.
Julia A Shore, Jeremy G Sumner, Barbara R Holland

J Math Biol· August 2020

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The Ancient Operational Code is Embedded in the Amino Acid Substitution Matrix and aaRS Phylogenies.
Julia A Shore, Barbara R Holland, Jeremy G Sumner, Kay Nieselt, Peter R Wills

J Mol Evol· March 2020

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Lie-Markov Models Derived from Finite Semigroups.
Jeremy G Sumner, Michael D Woodhams

Bull Math Biol· February 2019

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Maximum Likelihood Estimates of Rearrangement Distance: Implementing a Representation-Theoretic Approach.
Venta Terauds, Jeremy Sumner

Bull Math Biol· February 2019

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Distinguishing Between Convergent Evolution and Violation of the Molecular Clock for Three Taxa.
Jonathan D Mitchell, Jeremy G Sumner, Barbara R Holland

Syst Biol· September 2018

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Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants.
Jeremy G Sumner, Amelia Taylor, Barbara R Holland, Peter D Jarvis

J Math Biol· December 2017

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Maximum likelihood estimates of pairwise rearrangement distances.
Stuart Serdoz, Attila Egri-Nagy, Jeremy Sumner, Barbara R Holland, Peter D Jarvis

J Theor Biol· June 2017

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Dimensional Reduction for the General Markov Model on Phylogenetic Trees.
Jeremy G Sumner

Bull Math Biol· March 2017

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Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model.
Peter D Jarvis, Jeremy G Sumner

J Math Biol· August 2016

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A New Hierarchy of Phylogenetic Models Consistent with Heterogeneous Substitution Rates.
Michael D Woodhams, Jesús Fernández-Sánchez, Jeremy G Sumner

Syst Biol· July 2015

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Lie Markov models with purine/pyrimidine symmetry.
Jesús Fernández-Sánchez, Jeremy G Sumner, Peter D Jarvis, Michael D Woodhams

J Math Biol· March 2015

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A tensorial approach to the inversion of group-based phylogenetic models.
Jeremy G Sumner, Peter D Jarvis, Barbara R Holland

BMC Evol Biol· December 2014

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Lie geometry of 2×2 Markov matrices.
Jeremy G Sumner

J Theor Biol· June 2013

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Low-parameter phylogenetic inference under the general markov model.
Barbara R Holland, Peter D Jarvis, Jeremy G Sumner

Syst Biol· January 2013

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Is the general time-reversible model bad for molecular phylogenetics?
Jeremy G Sumner, Peter D Jarvis, Jesús Fernández-Sánchez, Bodie T Kaine, Michael D Woodhams

Syst Biol· December 2012

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Markov invariants for phylogenetic rate matrices derived from embedded submodels.
Peter D Jarvis, Jeremy G Sumner

IEEE/ACM Trans Comput Biol Bioinform· September 2012

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