Publications by authors named "Jerome Samir"

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Progenitor effects and unique transcriptomic signatures linked to differentiation phenotype in clonally expanded antigen-specific CD8 T memory stem cells.
Yanran Zhao, Jerome Samir, Elizabeth Keoshkerian, Hui Li, Hongyan An

J Immunol· November 2025

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Human axillary lymph node T follicular helper (Tfh) and Precursor-Tfh cells exhibit functional flexibility following seasonal influenza vaccination.
Hannah Law, Raymond H Y Louie, Omid R Faridani, Alexandra Carey Hoppé, Mollie Boyd, Jerome Samir

Clin Transl Immunology· October 2025

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Central memory T cells with key TCR repertoires and gene expression profiles dominate influenza CD8+ T cell pools across the human lifespan.
Tejas Menon, Hayley A McQuilten, Jerome Samir, Thi H O Nguyen, Ratana Lim

Proc Natl Acad Sci U S A· July 2025

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Expanded T cell clones with lymphoma driver somatic mutations accumulate in refractory celiac disease.
Mandeep Singh, Raymond H Y Louie, Jerome Samir, Matthew A Field, Claire Milthorpe

Sci Transl Med· May 2025

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Identification of clonally expanded γδ T-cell populations during CAR-T cell therapy.
Arman Safavi, Jerome Samir, Mandeep Singh, Martina Bonomi, Raymond Yip Louie

Immunol Cell Biol· January 2025

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Discovery of a monoclonal, high-affinity CD8 T-cell clone following natural hepatitis C virus infection.
Curtis Cai, Elizabeth Keoshkerian, Kristof Wing, Jerome Samir, Manuel Effenberger

Immunol Cell Biol· August 2024

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Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach.
Luca Ghita, Zhiyuan Yao, Yike Xie, Veronica Duran, Halise Busra Cagirici, Jerome Samir

Nat Immunol· December 2023

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Newborn and child-like molecular signatures in older adults stem from TCR shifts across human lifespan.
Carolien E van de Sandt, Thi H O Nguyen, Nicholas A Gherardin, Jeremy Chase Crawford, Jerome Samir

Nat Immunol· November 2023

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CAR and CAR T cells share a differentiation trajectory into an NK-like subset after CD19 CAR T cell infusion in patients with B cell malignancies.
Raymond Hall Yip Louie, Curtis Cai, Jerome Samir, Mandeep Singh, Ira W Deveson

Nat Commun· November 2023

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Identification of human progenitors of exhausted CD8 T cells associated with elevated IFN-γ response in early phase of viral infection.
Curtis Cai, Jerome Samir, Mehdi R Pirozyan, Thiruni N Adikari, Money Gupta

Nat Commun· December 2022

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VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2.
Mikhail Goncharov, Dmitry Bagaev, Dmitrii Shcherbinin, Ivan Zvyagin, Dmitry Bolotin, Jerome Samir

Nat Methods· September 2022

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Human CD8 T-stem cell memory subsets phenotypic and functional characterization are defined by expression of CD122 or CXCR3.
Yanran Zhao, Curtis Cai, Jerome Samir, Jean-Louis Palgen, Elizabeth Keoshkerian

Eur J Immunol· July 2021

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Natural killer cell receptors regulate responses of HLA-E-restricted T cells.
Lucy C Sullivan, Thi H O Nguyen, Christopher M Harpur, Sanda Stankovic, Abbie R Kanagarajah, Jerome Samir

Sci Immunol· April 2021

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Single-Cell Transcriptome Analysis of T Cells.
Willem Van Der Byl, Simone Rizzetto, Jerome Samir, Curtis Cai, Auda A Eltahla

Methods Mol Biol· June 2020

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Exploring and analysing single cell multi-omics data with VDJView.
Jerome Samir, Simone Rizzetto, Money Gupta, Fabio Luciani

BMC Med Genomics· February 2020

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VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.
Dmitry V Bagaev, Renske M A Vroomans, Jerome Samir, Ulrik Stervbo, Cristina Rius

Nucleic Acids Res· January 2020

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B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.
Simone Rizzetto, David N P Koppstein, Jerome Samir, Mandeep Singh, Joanne H Reed

Bioinformatics· August 2018

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